Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 2655.6 1360 100.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 2456.0 1358 93.4
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 2330.4 1452 85.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 2244.2 1368 84.6
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1612.4 1367 62.5
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1597.0 1365 61.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1593.9 1365 61.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1592.4 1360 61.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1589.7 1364 61.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1586.6 1378 61.5
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1583.9 1323 63.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1580.5 1392 60.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1564.3 1377 61.2
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1546.6 1367 61.4
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1525.4 1376 60.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1523.5 1357 60.1
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1519.6 1357 60.1
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1504.2 1409 58.5
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1490.7 1386 59.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1486.1 1426 57.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1481.8 1368 59.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1481.1 1375 57.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1473.0 1343 59.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1468.4 1366 57.4
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1453.7 1374 56.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1451.4 1206 63.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1446.8 1360 57.6
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1446.0 1355 58.3
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1445.6 1374 56.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1440.6 1394 56.3
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1439.9 1381 56.1
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1439.5 1384 56.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1434.5 1372 56.7
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1428.3 1382 57.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1426.0 1381 55.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1423.3 1404 55.5
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1422.1 1396 56.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1418.3 1387 55.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1412.1 1392 54.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1404.0 1345 57.5
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1400.6 1368 55.7
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1400.2 1350 55.9
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1395.9 1319 57.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1394.4 1363 55.5
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1391.3 1366 56.6
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1386.3 1355 55.1
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1383.6 1360 56.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1383.2 1357 55.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1382.1 1381 54.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1379.4 1354 55.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1376.3 1412 53.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1374.0 1355 54.5
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1373.6 1349 55.9
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1373.2 1352 55.3
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1366 55.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1354.0 1472 52.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1349.7 1397 53.3
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1349 54.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1332.0 1376 53.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1331.6 1344 54.3
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1330.1 1385 51.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1328.5 1344 54.2
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1327.0 1345 54.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1345 54.3
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1323.9 1347 54.3
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1319.7 1345 54.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1315.8 1368 53.5
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1308.9 1370 52.9
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1303.1 1367 54.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1300.8 1536 49.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1264.6 1358 52.8
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1253.4 1394 49.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1245.7 1373 51.4
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1245.3 1571 47.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1216.8 1123 58.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1211.1 1384 49.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1157.1 1366 49.6
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1120.1 1357 46.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.1e-310 1070.5 1117 54.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 6.0e-309 1064.7 1034 55.3
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-307 1060.1 989 58.1
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.2e-298 1030.4 1152 49.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.3e-292 1009.6 1011 55.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.4e-271 938.3 1046 51.6
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 4.8e-266 922.2 1335 42.1
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.4e-257 894.0 815 58.7
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.9e-241 838.6 830 55.4
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.3e-239 834.3 732 59.8
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.4e-225 787.7 701 59.1
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 5.2e-220 769.2 831 51.9
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.7e-202 711.1 1339 37.0
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.3e-191 674.1 1405 33.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.2e-168 598.6 1443 31.1
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.9e-167 593.6 516 60.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.5e-160 570.5 614 53.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 4.8e-157 560.1 438 67.1
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.5e-152 543.9 437 64.8
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 7.9e-144 516.2 542 53.0
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.3e-143 515.4 542 53.0
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.7e-141 507.3 375 73.3
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-140 505.4 665 42.3
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 7.2e-137 493.0 391 64.2
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 2.1e-136 491.5 339 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.2e-130 471.5 1008 33.3
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.6e-94 351.7 471 40.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.4e-94 351.3 268 67.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.0e-90 339.7 352 53.1
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 8.9e-87 326.6 567 39.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.0e-82 310.8 165 94.5
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.0e-82 310.8 465 42.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 9.5e-81 306.6 853 31.2
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.0e-67 260.8 442 38.0
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.9e-57 229.2 356 42.1
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 3.1e-55 221.9 223 55.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.6e-54 217.2 232 53.0
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 9.9e-54 216.9 408 39.0
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-52 213.0 138 75.4
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.1e-51 209.1 170 64.1
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-51 209.1 142 75.4
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.2e-48 197.6 191 58.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.4e-47 196.4 1033 24.3
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 2.0e-46 192.6 172 59.3
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.6e-46 190.7 152 73.0
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 9.9e-46 190.3 245 40.4
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 6.4e-45 187.6 222 49.5
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.0e-42 180.3 171 59.6
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.3e-42 179.1 140 65.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 6.7e-42 177.6 1194 22.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.5e-38 164.9 258 36.8
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.8e-32 145.6 136 55.9
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.8e-32 144.8 78 93.6
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.9e-29 135.6 136 50.7
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.1e-28 133.7 331 29.0
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.1e-27 129.4 191 44.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.0e-26 127.1 425 28.0
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 8.2e-24 117.5 102 58.8
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.4e-23 115.9 245 34.3
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 6.9e-23 114.4 117 52.1
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.6e-22 110.9 172 41.9
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 4.2e-20 105.1 88 53.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 7.2e-20 104.4 588 23.5
MELO3C030784.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.2e-20 104.4 61 91.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.4e-20 104.0 285 31.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.2e-19 103.6 152 41.4
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-19 102.8 108 55.6
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 3.6e-19 102.1 98 51.0
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 4.6e-19 101.7 100 49.0
MELO3C028433.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.9e-19 100.9 72 79.2
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.3e-16 93.6 95 47.4
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.1e-15 90.5 158 46.2
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.1e-15 88.6 158 46.2
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 9.1e-15 87.4 69 68.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-14 86.3 61 62.3
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.5e-13 81.3 114 42.1
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 4.2e-12 78.6 97 56.7
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 9.4e-12 77.4 97 55.7
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 3.0e-10 72.4 67 55.2
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.6e-09 69.3 73 52.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.4e-09 67.8 143 34.3
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.2e-08 66.2 96 36.5
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.8e-08 65.1 136 35.3
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 6.3e-08 64.7 69 55.1
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.1e-07 63.9 96 36.5
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.1e-07 62.4 134 33.6
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 7.0e-07 61.2 51 60.8
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 7.0e-07 61.2 130 31.5
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.5e-06 60.1 60 56.7
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 5.9e-06 58.2 56 51.8


User provided reference genes

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