Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 0.0e+00 1563.9 826 100.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 0.0e+00 1514.2 827 95.6
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 0.0e+00 1441.8 828 92.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 0.0e+00 1281.2 826 82.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 8.5e-311 1070.1 834 69.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 9.2e-305 1050.0 835 68.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.0e-303 1046.6 835 68.7
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 5.1e-303 1044.3 830 68.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 5.1e-303 1044.3 830 67.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.4e-299 1031.6 840 66.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.2e-298 1028.9 836 68.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 2.9e-298 1028.5 837 67.5
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.4e-297 1025.4 833 68.1
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.2e-297 1025.0 832 66.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 9.2e-297 1023.5 833 68.4
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.2e-296 1023.1 838 67.1
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.3e-295 1019.6 839 66.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 3.9e-295 1018.1 836 67.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 8.7e-295 1016.9 835 66.3
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 4.3e-294 1014.6 837 67.1
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.6e-294 1014.2 836 66.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.8e-293 1011.9 833 65.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 4.7e-293 1011.1 843 66.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 9.0e-292 1006.9 833 65.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 9.9e-291 1003.4 837 66.4
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.3e-290 1003.0 835 66.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-289 1000.0 833 64.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.4e-289 999.6 826 64.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.0e-287 993.4 834 64.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 2.3e-287 992.3 844 65.8
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.0e-287 991.9 837 65.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 3.3e-286 988.4 835 65.7
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 4.3e-286 988.0 823 63.9
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.3e-286 987.3 834 63.9
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-285 985.7 829 63.7
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-285 985.3 829 63.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 6.2e-285 984.2 829 63.4
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 8.1e-285 983.8 828 65.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.1e-284 981.9 836 64.7
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 4.0e-284 981.5 837 64.3
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 8.4e-282 973.8 836 63.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.2e-281 971.8 837 65.2
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.4e-281 971.1 831 63.3
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.1e-279 964.5 831 64.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.3e-278 961.4 838 63.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.7e-277 958.4 837 65.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.4e-276 955.7 845 62.2
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.4e-273 946.4 831 63.2
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 9.3e-273 943.7 849 63.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 7.9e-272 940.6 830 61.7
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.1e-270 936.8 830 62.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.6e-269 932.9 820 61.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.4e-268 929.1 839 61.7
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-267 926.8 837 60.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.4e-267 925.2 827 61.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.7e-266 922.9 839 60.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.8e-266 921.8 826 62.0
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.9e-265 919.5 823 63.3
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 4.6e-264 914.8 836 61.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.3e-263 913.3 831 60.2
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 6.7e-263 911.0 832 60.8
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-262 909.8 837 60.1
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.2e-261 904.0 838 62.3
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 9.0e-260 900.6 835 61.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.5e-259 899.8 858 59.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.0e-258 897.1 835 59.9
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.0e-258 894.8 838 60.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-252 877.1 837 58.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 4.1e-252 875.2 840 57.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 5.0e-250 868.2 812 59.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 8.5e-250 867.5 840 57.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 5.5e-249 864.8 838 57.8
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 3.0e-247 859.0 822 58.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-246 856.3 812 59.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.0e-246 856.3 812 59.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 5.7e-246 854.7 813 58.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.4e-244 850.1 811 58.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-244 849.4 814 58.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-244 849.4 814 58.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.3e-242 843.6 921 54.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 5.0e-242 841.6 784 60.7
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.7e-240 835.9 857 56.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.3e-239 832.8 858 55.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-238 830.5 837 56.8
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.1e-236 823.9 836 55.3
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 7.0e-236 821.2 869 55.8
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.2e-235 820.5 828 56.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.0e-234 815.1 832 55.4
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 4.0e-231 805.4 826 54.8
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.3e-230 802.4 825 54.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.1e-224 783.1 837 53.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.7e-224 781.9 825 54.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.4e-222 775.8 833 54.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.3e-221 771.2 827 56.3
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 3.8e-218 762.3 683 60.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.8e-216 756.1 800 53.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.5e-211 739.2 686 60.2
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.3e-209 732.6 828 51.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.0e-203 711.8 851 49.4
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 4.1e-196 689.1 614 60.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-190 669.8 553 64.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.4e-165 585.1 603 55.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.6e-160 570.9 607 55.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.5e-158 564.3 855 40.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.5e-145 521.2 839 40.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 7.4e-145 518.8 453 61.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.4e-140 504.6 374 70.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 8.8e-138 495.4 868 38.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.1e-135 488.4 795 39.5
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-131 474.9 387 67.4
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-125 453.0 483 53.6
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.2e-116 423.3 448 54.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.4e-113 413.3 444 54.7
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.2e-105 388.7 942 31.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.5e-100 369.0 310 62.6
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 3.9e-93 347.1 291 62.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.1e-90 337.4 238 75.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.0e-89 334.7 440 46.6
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.2e-88 331.3 242 74.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.9e-85 320.5 279 64.2
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.3e-84 316.2 331 51.7
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-81 308.9 325 55.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.2e-71 274.2 199 68.8
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 4.3e-68 263.8 228 60.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.1e-66 259.2 266 60.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.2e-65 255.8 876 28.7
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.0e-61 241.1 195 64.1
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.4e-58 231.5 215 59.5
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.2e-55 221.1 153 68.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.9e-50 203.4 181 61.3
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.6e-44 183.7 214 54.2
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 4.6e-38 164.1 156 58.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 5.1e-37 160.6 170 54.1
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-35 154.8 157 54.1
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-34 152.5 142 58.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.0e-32 146.4 518 25.5
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 8.4e-32 143.3 272 41.5
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.3e-29 135.2 274 39.8
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.3e-29 135.2 712 24.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.0e-29 134.8 105 64.8
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.7e-29 133.7 718 25.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.5e-28 131.7 281 38.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 9.7e-28 129.8 110 60.0
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-25 122.5 168 41.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 7.7e-25 120.2 73 69.9
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-19 102.1 118 50.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-17 96.3 76 65.8
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 3.8e-16 91.3 96 55.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 5.0e-16 90.9 176 39.8
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 3.6e-14 84.7 184 40.8
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 5.1e-13 80.9 187 39.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 6.7e-13 80.5 94 50.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-12 79.0 57 63.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.4e-10 72.0 65 56.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-09 68.6 71 47.9
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 3.8e-08 64.7 56 58.9
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.8e-08 64.7 56 58.9
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.9e-07 62.4 56 55.4
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.5e-07 60.8 45 64.4
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 9.4e-07 60.1 45 62.2
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.7e-06 58.5 45 62.2
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 4.7e-06 57.8 92 38.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 8.0e-06 57.0 148 27.0


User provided reference genes

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