Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G021950 Cucumis sativus L. HOM05D000156 ORTHO05D001290 1.4e-87 326.2 167 100.0
CsaV3_1G043970 Cucumis sativus L. HOM05D000156 ORTHO05D001290 3.4e-41 172.2 175 61.1
MELO3C009991.2 Cucumis melo HOM05D000156 ORTHO05D001290 1.1e-39 167.2 175 60.0
ClCG03G011960 Citrullus lanatus HOM05D000156 ORTHO05D001290 4.2e-39 165.2 177 59.9
Sed0020240 Sechium edule HOM05D000156 ORTHO05D001290 4.1e-34 148.7 177 54.8
Sed0000943 Sechium edule HOM05D000156 ORTHO05D001290 1.2e-33 147.1 175 54.9
Dinv18853 Davidia involucrata HOM05D000156 ORTHO05D001290 1.5e-20 103.6 175 43.4
CSS0002489 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 7.4e-20 101.3 175 43.4
Manes.11G099600 Manihot esculenta HOM05D000156 ORTHO05D001290 2.2e-19 99.8 174 43.1
GSVIVG01037598001 Vitis vinifera HOM05D000156 ORTHO05D001290 8.2e-19 97.8 175 42.9
Lj1A270G22 Lonicera japonica HOM05D000156 ORTHO05D001290 1.8e-18 96.7 175 42.3
Peaxi162Scf00429g00016 Petunia axillaris HOM05D000156 ORTHO05D001290 3.1e-18 95.9 177 40.7
Atru.chr3.3095 Acer truncatum HOM05D000156 ORTHO05D001290 4.1e-18 95.5 174 41.4
MSTRG.18793 Avicennia marina HOM05D000156 ORTHO05D001290 5.3e-18 95.1 171 39.8
FAN25G2929 Fragaria x ananassa HOM05D000156 ORTHO05D001290 5.3e-18 95.1 178 38.8
Nitab4.5_0001957g0040 Nicotiana tabacum HOM05D000156 ORTHO05D001290 7.0e-18 94.7 177 41.8
MSTRG.17678 Avicennia marina HOM05D000156 ORTHO05D001290 9.1e-18 94.4 175 40.6
Hma1.2p1_1961F.1_g309210 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 9.1e-18 94.4 175 41.1
Hma1.2p1_3010F.1_g331606 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 9.1e-18 94.4 175 41.1
TAR633G1127 Trochodendron aralioides HOM05D000156 ORTHO05D001290 9.1e-18 94.4 175 38.9
Cc01_g07760 Coffea canephora HOM05D000156 ORTHO05D001290 1.6e-17 93.6 174 40.8
Potri.001G215200 Populus trichocarpa HOM05D000156 ORTHO05D001290 1.6e-17 93.6 177 42.4
TAR636G2981 Trochodendron aralioides HOM05D000156 ORTHO05D001290 2.0e-17 93.2 175 37.7
Dinv33547 Davidia involucrata HOM05D000156 ORTHO05D001290 3.5e-17 92.4 175 40.6
CSS0015115 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 4.5e-17 92.0 175 41.7
Ciclev10028475m.g Citrus clementina HOM05D000156 ORTHO05D001290 4.5e-17 92.0 175 40.6
Solyc11g071840.2 Solanum lycopersicum HOM05D000156 ORTHO05D001290 5.9e-17 91.7 177 39.5
Sopen11g029510 Solanum pennellii HOM05D000156 ORTHO05D001290 5.9e-17 91.7 177 40.1
COL.COLO4_25395 Corchorus olitorius HOM05D000156 ORTHO05D001290 1.0e-16 90.9 175 41.7
Glyma.12G189900 Glycine max HOM05D000156 ORTHO05D001290 1.0e-16 90.9 172 41.3
Cfa010193 Carpinus fangiana HOM05D000156 ORTHO05D001290 1.3e-16 90.5 175 42.3
Gohir.A05G077600 Gossypium hirsutum HOM05D000156 ORTHO05D001290 2.2e-16 89.7 173 40.5
QL01p019319 Quercus lobata HOM05D000156 ORTHO05D001290 2.2e-16 89.7 180 41.1
Gorai.009G082100 Gossypium raimondii HOM05D000156 ORTHO05D001290 2.9e-16 89.4 175 41.1
Oeu031451.1 Olea europaea HOM05D000156 ORTHO05D001290 2.9e-16 89.4 175 40.0
CiPaw.14G093200 Carya illinoinensis HOM05D000156 ORTHO05D001290 3.8e-16 89.0 175 41.1
Gohir.A09G100500 Gossypium hirsutum HOM05D000156 ORTHO05D001290 8.5e-16 87.8 175 39.4
CANSAT54G2843 Cannabis sativa HOM05D000156 ORTHO05D001290 1.5e-15 87.0 175 40.6
Gohir.D09G099900 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.5e-15 87.0 175 40.0
RcHm_v2.0_Chr5g0048991 Rosa chinensis HOM05D000156 ORTHO05D001290 1.5e-15 87.0 178 38.8
Actinidia07285 Actinidia chinensis HOM05D000156 ORTHO05D001290 1.9e-15 86.7 168 41.7
CAN.G742.30 Capsicum annuum HOM05D000156 ORTHO05D001290 1.9e-15 86.7 177 39.0
Haze_23580 Corylus avellana HOM05D000156 ORTHO05D001290 2.5e-15 86.3 181 42.5
Rhsim13G0197400 Rhododendron simsii HOM05D000156 ORTHO05D001290 2.5e-15 86.3 201 38.3
FvH4_3g26200 Fragaria vesca HOM05D000156 ORTHO05D001290 3.2e-15 85.9 173 38.7
FAN11G3060 Fragaria x ananassa HOM05D000156 ORTHO05D001290 3.2e-15 85.9 173 38.7
Prupe.6G146700 Prunus persica HOM05D000156 ORTHO05D001290 4.2e-15 85.5 175 41.1
Sabra16G0128200 Salix brachista HOM05D000156 ORTHO05D001290 4.2e-15 85.5 177 40.1
Thecc.09G270500 Theobroma cacao HOM05D000156 ORTHO05D001290 5.5e-15 85.1 176 41.5
Gorai.006G116900 Gossypium raimondii HOM05D000156 ORTHO05D001290 9.4e-15 84.3 175 39.4
Aqoxy1G00628 Aquilegia oxysepala HOM05D000156 ORTHO05D001290 1.2e-14 84.0 180 36.1
PSO384G0393 Papaver somniferum HOM05D000156 ORTHO05D001290 1.6e-14 83.6 179 38.0
Oeu009035.1 Olea europaea HOM05D000156 ORTHO05D001290 2.1e-14 83.2 174 37.9
PSO339G2191 Papaver somniferum HOM05D000156 ORTHO05D001290 2.1e-14 83.2 179 37.4
Duzib170G0995 Durio zibethinus HOM05D000156 ORTHO05D001290 2.7e-14 82.8 174 39.1
Gohir.D05G080400 Gossypium hirsutum HOM05D000156 ORTHO05D001290 4.7e-14 82.0 174 39.7
MSTRG.12391 Avicennia marina HOM05D000156 ORTHO05D001290 8.0e-14 81.3 174 37.4
Potri.009G015800 Populus trichocarpa HOM05D000156 ORTHO05D001290 3.0e-13 79.3 181 39.2
Eucgr.J00581 Eucalyptus grandis HOM05D000156 ORTHO05D001290 4.0e-13 79.0 174 39.7
SalBow3G2908 Salvia bowleyana HOM05D000156 ORTHO05D001290 4.0e-13 79.0 176 38.1
PSO339G3726 Papaver somniferum HOM05D000156 ORTHO05D001290 6.7e-13 78.2 172 37.2
PSO384G4756 Papaver somniferum HOM05D000156 ORTHO05D001290 8.8e-13 77.8 172 36.6
MD11G1174600 Malus domestica HOM05D000156 ORTHO05D001290 1.5e-12 77.0 168 38.7
Psat7g203840 Pisum sativum HOM05D000156 ORTHO05D001290 1.5e-12 77.0 178 37.6
Lalb_Chr01g0005841 Lupinus albus HOM05D000156 ORTHO05D001290 3.3e-12 75.9 186 38.7
Hma1.2p1_3010F.1_g331610 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 5.7e-12 75.1 141 41.8
Nn2g14357 Nelumbo nucifera HOM05D000156 ORTHO05D001290 5.7e-12 75.1 175 33.7
PGR119G0657 Punica granatum HOM05D000156 ORTHO05D001290 5.7e-12 75.1 171 40.4
Phvul.005G118200 Phaseolus vulgaris HOM05D000156 ORTHO05D001290 1.7e-11 73.6 173 36.4
VMungo1080G1212 Vigna mungo HOM05D000156 ORTHO05D001290 3.7e-11 72.4 172 34.9
Ca_02971_v3 Cicer arietinum L. HOM05D000156 ORTHO05D001290 4.8e-11 72.0 179 36.9
AUR62001566 Chenopodium quinoa HOM05D000156 ORTHO05D001290 6.3e-11 71.6 174 35.1
Lalb_Chr03g0028481 Lupinus albus HOM05D000156 ORTHO05D001290 6.3e-11 71.6 176 39.2
TAR623G0493 Trochodendron aralioides HOM05D000156 ORTHO05D001290 6.3e-11 71.6 150 35.3
arahy.Tifrunner.gnm1.ann1.IB4S38 Arachis hypogaea HOM05D000178 ORTHO05D001740 8.2e-11 71.2 175 34.3
Duzib168G1756 Durio zibethinus HOM05D000156 ORTHO05D001290 1.1e-10 70.9 175 37.7
Lj3g0020313 Lotus japonicus HOM05D000156 ORTHO05D001290 1.1e-10 70.9 179 38.5
CARHR098080 Cardamine hirsuta HOM05D000156 ORTHO05D001290 2.4e-10 69.7 166 37.3
Medtr4g050480 Medicago truncatula HOM05D000156 ORTHO05D001290 2.4e-10 69.7 178 36.5
AUR62020216 Chenopodium quinoa HOM05D000156 ORTHO05D001290 4.1e-10 68.9 172 33.7
TWI79G0049 Tripterygium wilfordii HOM05D000156 ORTHO05D001290 4.1e-10 68.9 173 35.3
MD03G1158100 Malus domestica HOM05D000156 ORTHO05D001290 5.3e-10 68.6 169 36.1
Glyma.13G311700 Glycine max HOM05D000156 ORTHO05D001290 1.2e-09 67.4 175 36.6
AT3G22190 Arabidopsis thaliana HOM05D000156 ORTHO05D001290 1.6e-09 67.0 176 35.2
vmacro14317 Vaccinium macrocarpon HOM05D000156 ORTHO05D001290 1.6e-09 67.0 143 37.1
Thhalv10020807m.g Eutrema salsugineum HOM05D000156 ORTHO05D001290 2.0e-09 66.6 166 34.9
Glyma.09G177200 Glycine max HOM05D000156 ORTHO05D001290 2.0e-09 66.6 173 34.1
Rhsim01G0200600 Rhododendron simsii HOM05D000156 ORTHO05D001290 2.0e-09 66.6 178 36.0
BcaC05g28097 Brassica carinata HOM05D000156 ORTHO05D001290 2.7e-09 66.2 165 36.4
A05p26640 Brassica napus HOM05D000156 ORTHO05D001290 2.7e-09 66.2 165 35.8
BolC5t32864H Brassica oleracea HOM05D000156 ORTHO05D001290 2.7e-09 66.2 165 36.4
BraA05t21540Z Brassica rapa HOM05D000156 ORTHO05D001290 4.5e-09 65.5 165 35.2
TPR.G4660 Trifolium pratense HOM05D000156 ORTHO05D001290 5.9e-09 65.1 186 37.1
Sp3g19990 Schrenkiella parvula HOM05D000156 ORTHO05D001290 1.0e-08 64.3 166 33.7
Migut.N02444 Erythranthe guttata HOM05D000156 ORTHO05D001290 1.3e-08 63.9 154 33.1
arahy.Tifrunner.gnm1.ann1.H7NGII Arachis hypogaea HOM05D000156 ORTHO05D001290 1.7e-08 63.5 194 30.9
Sabra09G0009800 Salix brachista HOM05D000156 ORTHO05D001290 2.9e-08 62.8 75 48.0
Zm00001eb050290 Zea mays HOM05D000156 ORTHO05D001290 3.8e-08 62.4 185 31.9
SGA_v2.0_scaffold22G09816 Striga asiatica HOM05D000156 ORTHO05D001290 5.0e-08 62.0 51 66.7
AL3G36400 Arabidopsis lyrata HOM05D000156 ORTHO05D001290 6.5e-08 61.6 176 35.2
BcaC01g03461 Brassica carinata HOM05D000156 ORTHO05D001290 6.5e-08 61.6 166 32.5
BolC3t17502H Brassica oleracea HOM05D000156 ORTHO05D001290 6.5e-08 61.6 166 32.5
Ah.15g098890 Amaranthus hybridus HOM05D000156 ORTHO05D001290 8.5e-08 61.2 177 33.9
C03p52230 Brassica napus HOM05D000156 ORTHO05D001290 1.1e-07 60.8 166 32.5
Cpa.g.sc103.24 Carica papaya HOM05D000156 ORTHO05D001290 1.1e-07 60.8 162 35.8
BcaB04g20538 Brassica carinata HOM05D000156 ORTHO05D001290 1.5e-07 60.5 141 36.9
BcaB06g26321 Brassica carinata HOM05D000156 ORTHO05D001290 1.5e-07 60.5 163 33.7
Carub.0003s2236 Capsella rubella HOM05D000156 ORTHO05D001290 1.9e-07 60.1 169 34.9
Eucgr.B03811 Eucalyptus grandis HOM05D000156 ORTHO05D001290 1.9e-07 60.1 175 30.9
SalBow6G2200 Salvia bowleyana HOM05D000156 ORTHO05D001290 1.9e-07 60.1 62 56.5
Os03g0648300 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D001290 3.2e-07 59.3 183 29.5
DCAR_018751 Daucus carota HOM05D000156 ORTHO05D001290 4.2e-07 58.9 148 31.8
CDE04G1548 Ceratophyllum demersum HOM05D000156 ORTHO05D001290 7.2e-07 58.2 181 31.5
Os03g0787200 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D001290 1.2e-06 57.4 179 34.6
BraA01t03416Z Brassica rapa HOM05D000156 ORTHO05D001290 2.7e-06 56.2 167 32.9
BcaC09g49156 Brassica carinata HOM05D000156 ORTHO05D001290 3.6e-06 55.8 165 35.2
C01p42040 Brassica napus HOM05D000156 ORTHO05D001290 3.6e-06 55.8 165 35.2
THA.LOC104816973 Tarenaya hassleriana HOM05D000156 ORTHO05D001290 4.7e-06 55.5 175 33.1
A01p32970 Brassica napus HOM05D000156 ORTHO05D001290 6.1e-06 55.1 141 34.0
BraA03t13410Z Brassica rapa HOM05D000156 ORTHO05D001290 6.1e-06 55.1 166 31.9
HanXRQChr13g0420151 Helianthus annuus HOM05D000156 ORTHO05D001290 6.1e-06 55.1 169 34.3
HPP92_012158 Vanilla planifolia HOM05D000156 ORTHO05D001290 6.1e-06 55.1 181 31.5
BolC1t04163H Brassica oleracea HOM05D000156 ORTHO05D001290 8.0e-06 54.7 165 35.2
MBI05_g10659_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D001290 8.0e-06 54.7 71 42.3


User provided reference genes

Program Settings