Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 2.6e-305 1051.2 527 100.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 4.4e-292 1007.3 521 97.5
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 6.1e-286 986.9 525 94.7
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 5.4e-274 947.2 521 91.9
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.0e-252 875.5 519 85.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.2e-251 872.1 520 85.2
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.9e-250 869.0 525 83.8
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.6e-249 865.9 518 84.0
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.3e-248 862.1 520 83.5
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.9e-248 861.3 521 83.3
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 2.5e-247 858.6 527 82.2
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.3e-247 858.2 520 83.7
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.3e-247 857.8 518 81.9
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 9.5e-247 856.7 518 83.6
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 9.5e-247 856.7 518 83.0
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 4.7e-246 854.4 518 81.5
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 4.7e-246 854.4 518 82.6
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 8.1e-246 853.6 520 82.5
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 8.1e-246 853.6 513 84.0
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 8.1e-246 853.6 472 86.4
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.1e-245 853.2 518 82.6
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.4e-245 852.8 512 83.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.4e-245 852.0 518 81.1
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-244 849.7 513 83.4
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.4e-244 848.2 481 86.1
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 3.4e-244 848.2 496 84.3
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 5.8e-244 847.4 518 80.5
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.6e-244 847.0 511 83.0
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 7.6e-244 847.0 519 81.9
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.2e-243 845.5 500 83.0
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 2.9e-243 845.1 516 80.8
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 8.4e-243 843.6 519 81.9
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-242 843.2 522 81.4
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.4e-242 842.8 476 85.7
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.4e-242 842.8 518 82.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.4e-242 842.0 522 82.0
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 5.4e-242 840.9 522 81.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.2e-242 840.1 520 81.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 9.2e-242 840.1 489 83.8
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 3.5e-241 838.2 518 80.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 3.5e-241 838.2 475 86.1
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 4.6e-241 837.8 518 81.3
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 4.6e-241 837.8 496 83.3
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.6e-241 837.8 522 81.4
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.7e-240 835.9 539 79.4
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.3e-240 835.5 507 82.1
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.0e-240 835.1 486 85.0
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 6.6e-240 833.9 537 79.5
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 8.7e-240 833.6 516 79.5
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.5e-239 832.8 517 80.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.5e-239 832.8 530 79.4
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.9e-239 832.4 519 80.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 1.9e-239 832.4 511 80.4
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.5e-239 832.0 510 81.2
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.5e-239 832.0 488 84.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.5e-239 832.0 516 80.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-239 831.6 510 80.4
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 7.3e-239 830.5 516 79.7
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 9.6e-239 830.1 522 80.7
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-238 829.7 520 81.0
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.6e-238 828.2 518 79.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 6.2e-238 827.4 520 79.6
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.2e-238 827.4 502 82.1
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 8.1e-238 827.0 510 80.2
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.1e-237 826.6 479 83.7
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.1e-237 826.6 520 81.0
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-237 825.9 520 79.6
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 2.4e-237 825.5 514 80.7
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.1e-237 825.1 512 80.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 4.0e-237 824.7 508 82.3
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.9e-237 823.9 508 81.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 6.9e-237 823.9 529 80.3
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.2e-236 823.2 517 80.1
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.0e-236 822.4 513 80.5
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 5.8e-236 820.8 518 79.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.9e-235 818.5 500 81.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 4.2e-234 814.7 518 79.2
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.2e-233 813.1 509 78.4
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 3.0e-232 808.5 512 80.5
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 2.1e-230 802.4 520 79.6
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 3.6e-230 801.6 511 78.7
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.4e-229 799.7 505 78.8
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 6.9e-229 797.3 518 77.4
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.5e-228 794.7 488 82.2
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 9.9e-228 793.5 546 75.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 6.0e-225 784.3 524 75.4
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.0e-224 783.5 517 76.6
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.5e-223 778.9 556 74.5
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.2e-220 770.0 466 78.5
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.2e-220 770.0 466 79.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.9e-218 762.7 497 78.1
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.2e-218 761.5 509 76.6
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.9e-216 755.0 509 76.0
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 3.9e-216 755.0 584 69.7
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.9e-215 752.7 516 74.8
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.1e-213 746.9 486 77.0
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 6.9e-213 744.2 486 76.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.8e-212 741.1 523 73.0
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.2e-211 739.2 428 83.9
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 7.1e-210 734.2 471 75.8
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 2.1e-209 732.6 403 87.1
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.4e-205 719.9 526 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 6.9e-205 717.6 472 74.6
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.0e-204 716.1 500 73.6
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.1e-199 700.3 492 70.1
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 5.5e-194 681.4 512 68.4
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.7e-193 679.1 476 73.3
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 7.9e-193 677.6 467 70.7
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 5.1e-192 674.9 456 71.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 8.2e-182 641.0 505 66.5
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.7e-174 616.7 476 67.0
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.1e-173 614.0 465 69.5
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.1e-162 577.4 490 59.2
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 3.4e-151 539.3 329 81.2
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 4.1e-133 479.2 435 57.0
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 9.2e-133 478.0 470 53.4
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 5.1e-131 472.2 334 73.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 2.5e-130 469.9 265 86.8
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.3e-130 469.5 478 55.6
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.1e-125 451.8 280 80.4
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 9.6e-106 388.3 480 45.8
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.4e-101 374.4 252 75.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.1e-93 348.2 181 92.8
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 4.2e-93 346.3 188 84.6
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.0e-74 284.3 417 46.0
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.9e-70 270.4 210 65.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.8e-57 226.5 198 57.6
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.9e-45 188.0 144 69.4
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.1e-40 172.2 102 82.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.8e-36 157.5 118 62.7
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 2.1e-23 114.8 93 65.6
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 8.1e-20 102.8 84 65.5
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.3e-14 85.5 144 42.4
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.5e-13 82.0 43 81.4
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.9e-13 81.6 126 43.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 7.3e-13 79.7 238 28.6
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.2e-12 79.0 120 45.8
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 2.8e-12 77.8 45 73.3
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.7e-12 77.0 40 87.5
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.1e-11 75.9 47 74.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 8.9e-11 72.8 238 31.5
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 3.4e-10 70.9 92 50.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 5.4e-08 63.5 91 44.0
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 5.4e-08 63.5 57 59.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 4.6e-07 60.5 35 74.3
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 1.7e-06 58.5 112 39.3
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 3.9e-06 57.4 44 61.4


User provided reference genes

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