Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 8.9e-182 640.2 333 100.0
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 5.0e-177 624.4 333 96.7
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 2.9e-172 608.6 333 94.6
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 3.0e-161 572.0 333 88.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-158 563.1 334 89.8
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 8.4e-140 500.7 337 77.2
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 3.2e-139 498.8 337 76.9
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.6e-138 496.5 307 80.5
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.8e-134 483.0 298 80.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 3.1e-134 482.3 304 80.6
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.0e-134 481.9 304 79.3
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 9.0e-134 480.7 303 79.2
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 9.0e-134 480.7 282 83.7
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.2e-133 480.3 298 80.2
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.5e-133 479.9 341 73.3
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.0e-133 479.6 297 79.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.0e-133 479.6 283 83.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.4e-133 478.8 298 80.2
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.5e-133 478.4 276 84.4
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.5e-133 478.4 276 84.1
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 4.5e-133 478.4 276 84.1
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 9.9e-133 477.2 276 84.1
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 9.9e-133 477.2 276 84.1
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.9e-133 477.2 278 83.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.7e-132 476.5 276 84.1
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.2e-132 476.1 289 82.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.2e-132 476.1 276 84.4
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.2e-132 476.1 276 83.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.2e-132 476.1 312 74.7
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.2e-132 476.1 307 79.5
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 2.9e-132 475.7 334 74.3
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.8e-132 475.3 312 76.9
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.8e-132 475.3 304 78.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.9e-132 474.9 327 74.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.4e-132 474.6 276 83.7
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 8.4e-132 474.2 282 81.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.1e-131 473.8 276 82.6
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-131 473.8 283 81.3
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.4e-131 473.4 318 76.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.4e-131 473.4 289 81.0
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.4e-131 473.4 307 78.8
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 4.2e-131 471.9 296 81.4
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.2e-131 471.9 276 82.2
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.5e-131 471.5 313 76.4
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.5e-131 471.5 312 78.2
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 5.5e-131 471.5 310 75.8
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 5.5e-131 471.5 301 79.1
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.1e-131 471.1 309 76.7
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.1e-131 471.1 283 81.3
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 9.3e-131 470.7 304 77.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-130 470.3 330 72.1
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.2e-130 470.3 337 71.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.7e-130 469.2 276 81.5
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 2.7e-130 469.2 307 78.5
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.7e-130 469.2 304 77.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.6e-130 468.4 310 76.8
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 4.6e-130 468.4 304 76.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 6.0e-130 468.0 311 75.9
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 7.9e-130 467.6 299 79.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.3e-129 466.8 300 77.0
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-129 466.8 276 81.2
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.3e-129 466.8 287 81.2
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.8e-129 466.5 300 76.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 1.8e-129 466.5 277 81.6
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.8e-129 466.5 302 76.8
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.7e-129 464.5 303 76.6
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.7e-129 464.5 278 81.3
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 8.7e-129 464.2 298 78.5
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 8.7e-129 464.2 297 77.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.1e-128 463.8 315 77.1
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.5e-128 463.4 306 75.8
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 2.5e-128 462.6 300 75.7
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.5e-128 462.6 328 71.3
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.5e-128 462.6 307 77.9
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 2.5e-128 462.6 306 75.5
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 7.4e-128 461.1 315 76.8
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 7.4e-128 461.1 299 76.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 7.4e-128 461.1 301 74.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.6e-128 460.7 314 72.9
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 9.6e-128 460.7 309 75.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 9.6e-128 460.7 317 73.2
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 9.6e-128 460.7 299 77.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.3e-127 460.3 308 76.6
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.1e-127 459.5 276 80.8
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 2.8e-127 459.1 338 70.4
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 3.7e-127 458.8 307 76.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 8.2e-127 457.6 307 76.5
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.1e-126 457.2 284 77.5
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.4e-126 456.8 338 70.1
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 3.1e-126 455.7 306 75.2
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.0e-126 455.3 274 79.9
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.0e-126 454.1 306 75.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.2e-125 453.8 287 76.7
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.5e-125 453.4 300 74.3
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.6e-125 452.6 306 75.2
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.4e-125 452.2 308 72.1
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.9e-124 449.1 317 72.9
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 6.5e-124 448.0 318 72.6
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 8.4e-124 447.6 312 72.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-123 446.4 310 74.2
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.2e-123 445.3 274 79.6
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.6e-122 443.4 310 71.6
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 3.5e-122 442.2 269 79.6
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.5e-122 442.2 305 72.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.8e-121 439.9 274 77.0
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.0e-121 439.1 310 73.2
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 3.9e-121 438.7 302 72.2
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 5.1e-121 438.3 296 76.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 6.7e-121 438.0 307 71.3
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.9e-120 436.4 265 79.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 2.5e-120 436.0 274 77.4
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 5.7e-120 434.9 276 77.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 9.7e-120 434.1 272 76.5
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 4.8e-119 431.8 307 69.1
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.8e-118 429.9 281 72.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.4e-118 429.5 328 67.4
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.1e-118 428.7 279 74.2
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 5.3e-118 428.3 299 71.2
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 5.3e-118 428.3 302 70.5
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 9.0e-118 427.6 277 76.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 5.9e-117 424.9 299 72.2
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 4.2e-115 418.7 295 70.5
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 4.6e-114 415.2 304 71.1
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 6.1e-114 414.8 281 70.5
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 8.8e-113 411.0 270 75.2
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 5.7e-112 408.3 283 71.7
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 9.7e-112 407.5 253 77.9
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.2e-111 406.4 358 60.6
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 6.3e-111 404.8 287 68.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.1e-110 402.5 325 63.1
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.5e-109 400.2 280 71.4
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 3.8e-108 395.6 306 66.3
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.4e-107 393.7 285 66.0
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.2e-107 392.1 321 65.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.8e-103 379.4 273 72.5
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.6e-101 372.9 302 60.9
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 8.5e-100 367.9 254 72.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.3e-95 354.0 298 61.1
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 5.3e-94 348.6 274 61.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 8.5e-92 341.3 299 57.9
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.3e-89 333.2 186 86.6
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 2.0e-85 320.1 207 77.8
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.6e-82 309.3 189 81.5
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 4.7e-82 308.9 282 58.2
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.3e-79 300.8 273 52.0
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.3e-79 298.5 187 78.6
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.0e-77 293.5 310 50.6
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 9.5e-75 284.6 286 55.6
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.0e-69 266.9 239 62.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 9.5e-67 258.1 218 64.7
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 5.2e-65 252.3 174 74.7
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-62 243.8 224 61.2
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.2e-56 224.6 257 52.1
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.7e-55 220.7 159 67.9
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.9e-55 219.9 123 85.4
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 4.3e-51 206.1 178 59.0
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.4e-49 201.1 175 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.6e-44 182.2 196 53.6
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 3.2e-38 163.3 90 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.0e-36 156.8 138 59.4
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-31 140.6 77 84.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.4e-30 136.0 280 31.4
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.7e-28 131.0 89 73.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 8.7e-28 128.6 184 45.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.9e-27 127.5 75 82.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 6.2e-26 122.5 68 88.2
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 9.3e-22 108.6 164 40.9
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 4.3e-19 99.8 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.2e-15 87.4 83 55.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 6.2e-10 69.3 81 48.1
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 6.9e-09 65.9 179 28.5
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 4.2e-06 56.6 59 45.8
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.2e-06 56.6 31 80.6


User provided reference genes

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