Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-175 619.8 305 100.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.8e-174 614.4 305 99.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.2e-170 601.7 305 96.4
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.0e-168 596.7 305 95.4
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.8e-168 595.9 305 95.1
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 8.2e-166 587.0 305 93.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 8.2e-166 587.0 305 94.8
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 86.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 84.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 85.2
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 85.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 84.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.9
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 83.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 85.2
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 85.2
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 83.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 84.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 84.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 84.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 82.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 84.6
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.3
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.6e-145 518.5 302 83.1
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.6
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 82.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 7.9e-145 517.3 307 82.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 7.9e-145 517.3 304 83.2
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 83.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 83.6
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.0
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 83.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.3
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 82.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.1e-143 513.5 301 84.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.6
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.6
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.6
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 83.0
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.6
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.6
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.4e-143 511.5 330 77.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 82.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 82.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 82.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.7
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 82.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 82.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 82.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 82.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 81.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.8e-141 506.1 301 83.7
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 82.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 82.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 3.1e-141 505.4 305 81.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 3.1e-141 505.4 305 80.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 3.1e-141 505.4 308 81.5
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.6e-140 503.1 305 81.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-140 502.7 305 80.3
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.5e-140 501.9 305 81.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 4.5e-140 501.5 305 79.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 5.9e-140 501.1 305 79.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 7.7e-140 500.7 305 80.7
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.2e-139 499.2 305 81.0
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 80.7
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 81.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.5e-138 496.5 305 80.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.5e-138 495.7 305 79.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.2e-138 495.4 305 79.3
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 9.4e-138 493.8 305 78.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 79.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 79.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.1e-137 492.7 302 80.1
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 78.4
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.5e-135 486.5 300 79.0
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.5e-135 486.5 372 68.5
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.0e-135 486.1 307 77.2
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 77.6
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 4.4e-135 485.0 326 74.8
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 6.3e-134 481.1 307 77.5
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 303 77.9
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.1e-133 478.8 305 77.7
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 75.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.7e-132 475.7 307 75.6
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.5e-132 474.9 304 77.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 75.4
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.0e-131 471.5 305 75.7
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 5.0e-131 471.5 305 74.8
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 6.5e-131 471.1 307 74.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 8.5e-131 470.7 306 75.2
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 5.5e-130 468.0 305 75.1
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.2e-130 467.6 307 74.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 4.0e-128 461.8 303 74.6
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 6.3e-126 454.5 305 74.1
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.1e-125 451.8 388 61.6
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 7.0e-125 451.1 304 72.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 9.1e-125 450.7 304 72.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.6e-124 449.9 304 72.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.6e-124 449.9 304 72.0
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 3.1e-117 425.6 306 68.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.7e-116 422.5 300 69.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.5e-116 421.8 304 67.4
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.3e-114 415.6 304 66.8
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 4.9e-110 401.7 235 83.0
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 4.9e-110 401.7 305 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.9e-107 392.1 303 63.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.5e-106 390.2 302 63.9
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.4e-103 379.0 261 74.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.0e-100 368.2 225 80.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 6.2e-97 358.2 309 59.2
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.7e-94 349.0 225 78.7
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.9e-85 320.1 226 72.6
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 9.2e-85 317.8 209 73.7
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 7.1e-69 265.0 186 72.0
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 6.0e-68 261.9 143 88.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.4e-64 250.0 149 78.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 9.0e-64 248.1 181 69.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.6e-63 246.5 301 51.8
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 9.0e-56 221.5 154 71.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.2e-53 212.6 153 68.6
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-39 167.5 83 90.4
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.9e-37 160.6 79 91.1
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.9e-37 160.6 125 64.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.2e-37 159.5 89 80.9
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.2e-36 157.9 299 34.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.1e-36 157.1 80 86.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.7e-36 156.8 103 73.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 3.9e-35 152.9 136 54.4
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.4e-32 144.4 308 35.4
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.9e-32 142.1 205 44.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 7.2e-29 132.1 97 71.1
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.6e-26 123.6 76 75.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.3e-24 115.9 58 89.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 8.5e-22 108.6 60 83.3
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.1e-20 104.0 60 83.3
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 5.3e-16 89.4 296 29.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-12 78.2 69 65.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 7.5e-10 68.9 191 31.9


User provided reference genes

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