Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G021130 Cucumis sativus L. HOM05D007314 ORTHO05D003768 5.0e-51 204.1 103 100.0
Sed0028051 Sechium edule HOM05D007314 ORTHO05D010380 2.0e-23 112.5 104 62.5
MELO3C031901.2 Cucumis melo HOM05D022254 ORTHO05D003768 1.5e-18 96.3 54 81.5
ClCG07G007690 Citrullus lanatus HOM05D000107 ORTHO05D000062 3.1e-16 88.6 100 48.0
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 1.5e-15 86.3 93 50.5
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 2.6e-15 85.5 100 47.0
MELO3C029726.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.8e-14 81.6 85 52.9
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 2.4e-13 79.0 88 44.3
CANSAT25G0318 Cannabis sativa HOM05D007314 ORTHO05D010380 2.7e-12 75.5 65 53.8
Sed0017732 Sechium edule HOM05D007314 ORTHO05D003768 2.3e-11 72.4 84 52.4
Rhsim11G0005200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.9e-11 71.6 60 53.3
Rhsim01G0163400 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.7e-11 70.5 60 51.7
Rhsim01G0043800 Rhododendron simsii HOM05D007314 ORTHO05D003768 1.1e-10 70.1 60 51.7
Rhsim04G0083300 Rhododendron simsii HOM05D007314 ORTHO05D010380 1.1e-10 70.1 62 50.0
Rhsim01G0136300 Rhododendron simsii HOM05D004909 ORTHO05D009316 2.5e-10 68.9 60 50.0
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 9.6e-10 67.0 62 53.2
Rhsim03G0123400 Rhododendron simsii HOM05D007314 ORTHO05D010380 1.3e-09 66.6 60 50.0
Rhsim06G0121300 Rhododendron simsii HOM05D007314 ORTHO05D010380 1.3e-09 66.6 104 39.4
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.6e-09 65.1 65 43.1
Rhsim01G0098700 Rhododendron simsii HOM05D007314 ORTHO05D010380 3.6e-09 65.1 60 46.7
RcHm_v2.0_Chr5g0064791 Rosa chinensis HOM05D007314 ORTHO05D023934 3.6e-09 65.1 52 55.8
RhsimUnG0146400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-08 63.5 60 50.0
C06p45510 Brassica napus HOM05D022254 ORTHO05D000233 2.4e-08 62.4 80 40.0
BolC6t39606H Brassica oleracea HOM05D022254 ORTHO05D000233 2.4e-08 62.4 80 40.0
BolC7t42319H Brassica oleracea HOM05D022254 ORTHO05D000233 4.0e-08 61.6 87 37.9
FvH4_4g10363 Fragaria vesca HOM05D008321 ORTHO05D003768 5.3e-08 61.2 79 36.7
Ciclev10003872m.g Citrus clementina HOM05D002644 ORTHO05D000233 6.9e-08 60.8 62 41.9
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 3.4e-07 58.5 57 42.1
FAN28G0089 Fragaria x ananassa HOM05D008321 ORTHO05D003768 9.9e-07 57.0 88 35.2
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 9.9e-07 57.0 67 37.3
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 1.3e-06 56.6 84 39.3
FvH4_5g37213 Fragaria vesca HOM05D008321 ORTHO05D010380 1.7e-06 56.2 72 38.9


User provided reference genes

Program Settings