Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 8.1e-64 246.9 123 100.0
CsaV3_1G024270 Cucumis sativus L. HOM05D000002 ORTHO05D000001 2.7e-27 125.6 70 91.4
CsaV3_2G008780 Cucumis sativus L. HOM05D000002 ORTHO05D000001 7.4e-17 90.9 59 81.4
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 2.7e-11 72.4 50 66.0
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 2.7e-11 72.4 50 66.0
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 1.0e-10 70.5 50 64.0
ClCG03G003090 Citrullus lanatus HOM05D000025 ORTHO05D000040 6.7e-10 67.8 51 68.6
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 4.4e-09 65.1 66 45.5
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 4.4e-09 65.1 43 65.1
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 1.7e-08 63.2 60 50.0
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 1.7e-08 63.2 50 58.0
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 4.8e-08 61.6 57 50.9
Atru.chr11.277 Acer truncatum HOM05D000002 ORTHO05D000001 6.3e-08 61.2 65 46.2
CANSAT25G2785 Cannabis sativa HOM05D000002 ORTHO05D000001 6.3e-08 61.2 68 42.6
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 8.2e-08 60.8 60 46.7
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 1.1e-07 60.5 60 48.3
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 1.1e-07 60.5 60 48.3
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.4e-07 60.1 57 56.1
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 1.4e-07 60.1 43 53.5
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.8e-07 59.7 63 44.4
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 1.8e-07 59.7 43 53.5
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 3.1e-07 58.9 60 45.0
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 3.1e-07 58.9 60 45.0
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.9 63 41.3
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 5.3e-07 58.2 50 54.0
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 7.0e-07 57.8 43 58.1
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 7.0e-07 57.8 43 58.1
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 7.0e-07 57.8 43 58.1
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 7.0e-07 57.8 60 46.7
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 9.1e-07 57.4 55 43.6
FvH4_1g26621 Fragaria vesca HOM05D013433 ORTHO05D000001 1.2e-06 57.0 80 40.0
FvH4_7g10872 Fragaria vesca HOM05D013433 ORTHO05D000001 1.2e-06 57.0 80 40.0
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.2e-06 57.0 57 47.4
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 1.5e-06 56.6 43 58.1
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 1.5e-06 56.6 62 46.8
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 2.0e-06 56.2 43 58.1
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 2.0e-06 56.2 79 36.7
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-06 56.2 76 35.5
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 2.0e-06 56.2 80 35.0
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 2.0e-06 56.2 43 55.8
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 2.0e-06 56.2 43 51.2
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 2.0e-06 56.2 43 51.2
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 2.6e-06 55.8 43 58.1
Nn4g25473 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-06 55.8 77 35.1
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.6e-06 55.8 74 35.1
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.6e-06 55.8 60 46.7
VMungo1309G2055 Vigna mungo HOM05D008404 ORTHO05D000001 2.6e-06 55.8 77 31.2
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 3.4e-06 55.5 37 70.3
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.4e-06 55.5 32 68.8
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 3.4e-06 55.5 32 68.8
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 3.4e-06 55.5 43 55.8
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 3.4e-06 55.5 43 55.8
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 3.4e-06 55.5 43 55.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.4e-06 55.5 48 60.4
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 3.4e-06 55.5 79 36.7
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.4e-06 55.5 57 45.6
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.4e-06 55.5 57 45.6
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 3.4e-06 55.5 43 58.1
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 3.4e-06 55.5 43 60.5
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 4.5e-06 55.1 43 58.1
Hma1.2p1_1611F.1_g293530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.5e-06 55.1 67 40.3
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 4.5e-06 55.1 80 32.5
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 4.5e-06 55.1 43 60.5
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 5.9e-06 54.7 50 52.0
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 5.9e-06 54.7 60 46.7
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 5.9e-06 54.7 82 32.9
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 5.9e-06 54.7 63 44.4
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 7.7e-06 54.3 43 55.8
Nitab4.5_0003319g0020 Nicotiana tabacum HOM05D002833 ORTHO05D000001 7.7e-06 54.3 75 33.3
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 7.7e-06 54.3 80 30.0


User provided reference genes

Program Settings