Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 9.6e-172 606.7 294 100.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 2.8e-155 552.0 326 83.7
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 7.9e-150 533.9 294 87.1
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.1e-127 460.3 232 96.6
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 2.4e-114 416.0 290 70.0
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 5.9e-113 411.4 287 67.6
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.0e-112 410.6 294 67.3
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 5.0e-112 408.3 294 66.0
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 5.0e-112 408.3 292 66.1
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 6.5e-112 407.9 287 66.2
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.1e-111 407.1 292 65.8
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 7.2e-111 404.4 292 65.4
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 9.4e-111 404.1 294 65.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.2e-110 403.7 293 65.9
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.7e-110 402.5 296 65.5
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.3e-109 399.4 278 68.7
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 6.8e-109 397.9 292 65.4
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.0e-108 396.4 297 64.3
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.6e-108 396.0 293 63.5
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 9.8e-108 394.0 292 65.4
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.3e-107 393.7 296 64.5
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.7e-107 393.3 317 60.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 3.7e-107 392.1 287 67.2
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 6.3e-107 391.3 289 65.4
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.1e-106 389.0 291 64.9
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 4.1e-106 388.7 288 66.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.2e-105 387.1 289 65.4
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 2.0e-105 386.3 278 66.2
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.0e-105 386.3 291 63.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.7e-105 386.0 270 70.4
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.5e-105 385.6 271 67.5
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 4.5e-105 385.2 294 63.3
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 5.9e-105 384.8 281 65.5
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 5.9e-105 384.8 298 63.8
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.7e-104 383.3 276 66.7
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.9e-104 382.5 278 65.1
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 5.0e-104 381.7 280 65.7
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.9e-103 379.8 279 65.2
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 2.5e-103 379.4 294 62.9
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.0e-101 374.0 280 64.3
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.8e-101 373.2 277 65.0
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.0e-101 372.5 263 66.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 5.2e-101 371.7 278 65.1
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 5.2e-101 371.7 271 67.2
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.5e-100 370.2 230 73.0
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.4e-100 369.0 268 65.7
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 7.5e-100 367.9 230 73.5
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.2e-99 366.3 269 65.1
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 2.9e-99 365.9 215 78.6
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 4.9e-99 365.2 223 74.4
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 8.3e-99 364.4 264 65.2
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 8.3e-99 364.4 248 66.5
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.4e-98 363.6 291 61.5
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.2e-97 360.5 290 62.4
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 4.6e-97 358.6 295 62.7
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 5.9e-97 358.2 292 59.6
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 5.9e-97 358.2 225 73.8
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.9e-97 358.2 249 68.3
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 5.9e-97 358.2 231 70.1
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.7e-96 356.7 233 68.7
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.1e-95 354.0 311 58.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.1e-95 354.0 215 74.4
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 1.1e-95 354.0 238 67.2
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.5e-95 353.6 228 71.5
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.9e-95 353.2 292 60.6
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 2.5e-95 352.8 236 68.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 9.5e-95 350.9 218 71.1
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.1e-93 345.9 316 57.9
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.5e-92 343.6 236 66.5
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.5e-92 343.6 256 62.9
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.0e-92 343.2 235 67.7
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.0e-92 343.2 245 65.3
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 3.4e-92 342.4 239 66.1
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.3e-91 340.5 268 62.7
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 4.9e-91 338.6 226 68.6
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 6.4e-91 338.2 236 64.8
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.1e-90 337.4 221 69.7
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.4e-90 337.0 250 64.0
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.7e-89 332.8 236 64.0
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.7e-88 330.1 247 63.6
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 3.0e-88 329.3 232 65.1
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 3.0e-88 329.3 235 63.4
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 3.0e-88 329.3 235 63.4
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 3.0e-88 329.3 235 63.4
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 5.0e-88 328.6 255 62.4
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.1e-85 320.9 265 58.5
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.6e-84 316.2 219 63.5
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.7e-83 313.5 192 74.0
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 3.7e-83 312.4 225 63.1
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 2.3e-80 303.1 186 72.6
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 2.8e-78 296.2 173 77.5
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.8e-78 296.2 267 55.8
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 6.2e-78 295.0 193 72.0
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.8e-77 293.5 248 60.5
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 8.9e-77 291.2 225 63.1
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 5.8e-76 288.5 275 53.5
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 2.2e-75 286.6 224 57.1
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.9e-75 286.2 175 73.7
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 6.4e-75 285.0 175 73.7
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 8.4e-75 284.6 204 67.2
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 7.8e-65 251.5 237 56.1
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 2.6e-52 209.9 158 62.0
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.4e-50 204.1 128 76.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.9e-50 203.8 225 45.3
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.4e-50 203.4 128 76.6
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.2e-49 201.1 150 64.7
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 2.1e-49 200.3 221 44.8
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.9e-49 198.4 224 47.8
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.1e-45 188.0 227 41.9
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 3.4e-44 183.0 143 60.1
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 4.5e-44 182.6 215 45.1
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.8e-43 179.5 167 56.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 1.1e-42 177.9 117 73.5
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 4.1e-37 159.5 97 75.3
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 4.1e-37 159.5 97 75.3
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 7.2e-34 148.7 107 64.5
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 3.7e-30 136.3 106 65.1
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 3.1e-29 133.3 155 50.3
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 3.1e-29 133.3 155 50.3
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.8e-24 117.5 176 43.2
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.8e-21 107.5 79 62.0
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.5e-20 102.8 77 61.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.0e-16 91.7 125 46.4
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.7e-16 89.0 56 69.6
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 7.4e-15 85.5 110 47.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 1.8e-13 80.9 115 46.1
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 5.3e-13 79.3 105 46.7
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.0e-13 79.0 48 70.8
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.7e-11 74.3 92 44.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.3e-07 60.1 36 77.8
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 4.4e-07 59.7 48 52.1
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 9.7e-07 58.5 179 27.4
BcaB03g11784 Brassica carinata HOM05D000450 ORTHO05D000327 2.2e-06 57.4 212 25.5


User provided reference genes

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