Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.8e-72 275.8 138 100.0
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.5e-69 265.4 138 96.4
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.2e-68 263.1 138 94.2
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.3e-62 243.0 139 88.5
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 6.3e-57 224.2 139 81.3
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.7e-46 189.5 141 70.9
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.2e-46 189.1 141 71.6
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 5.0e-46 188.0 142 69.7
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 3.2e-45 185.3 140 71.4
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 7.2e-45 184.1 142 66.9
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 9.4e-45 183.7 141 68.1
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 9.4e-45 183.7 141 69.5
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.2e-44 183.3 141 65.2
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.2e-44 183.3 143 68.5
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.7e-44 182.2 139 66.2
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.7e-44 182.2 141 68.8
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 4.7e-44 181.4 143 66.4
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 4.7e-44 181.4 143 66.4
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.0e-43 180.3 140 67.9
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.0e-43 180.3 145 67.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.4e-43 179.9 143 66.4
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.8e-43 179.5 141 68.8
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.3e-43 179.1 140 70.0
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 3.0e-43 178.7 141 66.7
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 3.0e-43 178.7 141 66.7
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 5.2e-43 177.9 141 66.0
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 6.8e-43 177.6 141 69.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 8.8e-43 177.2 146 65.1
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 2.0e-42 176.0 140 64.3
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 3.4e-42 175.3 140 65.7
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 4.4e-42 174.9 142 66.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 5.7e-42 174.5 123 73.2
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 9.8e-42 173.7 129 72.9
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.7e-41 172.9 138 64.5
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.8e-41 172.2 142 63.4
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 4.8e-41 171.4 143 66.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 6.3e-41 171.0 143 63.6
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 6.3e-41 171.0 143 67.1
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.4e-40 169.9 139 64.7
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.8e-40 169.5 128 69.5
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.8e-40 169.5 147 63.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 2.4e-40 169.1 139 66.9
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.4e-40 169.1 128 68.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.1e-40 168.7 140 65.7
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.1e-40 168.3 149 65.8
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 7.0e-40 167.5 140 65.7
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.6e-39 166.4 139 64.0
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.0e-39 166.0 128 69.5
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.7e-39 165.6 143 61.5
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.7e-39 165.6 143 61.5
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 3.5e-39 165.2 141 59.6
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 4.5e-39 164.9 139 62.6
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 4.5e-39 164.9 143 62.9
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.3e-38 163.3 140 63.6
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.9e-38 162.2 128 67.2
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.9e-38 162.2 128 66.4
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.8e-38 161.8 142 62.0
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 3.8e-38 161.8 143 62.2
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 6.5e-38 161.0 140 63.6
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 8.5e-38 160.6 139 61.2
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 8.5e-38 160.6 140 62.1
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.1e-37 160.2 141 59.6
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.9e-37 159.5 145 64.8
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.5e-37 159.1 139 63.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 5.5e-37 157.9 139 61.9
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 5.5e-37 157.9 127 64.6
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.1e-36 156.0 139 60.4
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.1e-36 156.0 143 62.2
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.1e-36 156.0 139 61.9
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 2.7e-36 155.6 140 61.4
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 4.7e-36 154.8 141 63.1
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 4.7e-36 154.8 140 57.9
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 8.0e-36 154.1 136 62.5
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 8.0e-36 154.1 126 65.1
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 1.4e-35 153.3 142 60.6
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 4.0e-35 151.8 141 61.7
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 8.8e-35 150.6 121 64.5
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 8.8e-35 150.6 127 65.4
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 9.8e-34 147.1 139 56.8
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.3e-33 146.7 142 59.9
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.7e-33 146.4 124 66.9
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.7e-33 146.4 140 58.6
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 2.2e-33 146.0 141 55.3
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 3.7e-33 145.2 144 60.4
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 6.3e-33 144.4 139 55.4
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.1e-32 143.7 145 58.6
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.4e-32 143.3 142 57.7
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 4.1e-32 141.7 130 56.9
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 7.0e-32 141.0 130 60.0
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 7.0e-32 141.0 143 58.7
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 9.1e-32 140.6 121 61.2
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 9.1e-32 140.6 143 59.4
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 9.1e-32 140.6 143 58.7
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-31 140.2 123 63.4
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 143 59.4
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 2.0e-31 139.4 123 61.0
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 3.5e-31 138.7 132 57.6
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 4.5e-31 138.3 145 57.2
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 5.9e-31 137.9 126 57.9
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 5.9e-31 137.9 126 57.9
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.0e-30 137.1 143 57.3
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.7e-30 136.3 143 55.9
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.1e-29 133.7 143 54.5
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.9e-29 132.9 124 62.1
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 4.2e-29 131.7 132 58.3
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 7.2e-29 131.0 151 53.6
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 9.5e-29 130.6 143 53.1
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.6e-28 129.8 132 58.3
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 8.9e-27 124.0 131 56.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.6e-26 122.5 91 70.3
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 7.5e-26 120.9 122 54.1
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 7.5e-26 120.9 120 56.7
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 9.8e-26 120.6 134 57.5
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 4.9e-25 118.2 121 54.5
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 9.2e-24 114.0 88 64.8
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 1.0e-22 110.5 145 48.3
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.0e-22 110.5 121 50.4
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.3e-22 110.2 132 50.0
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 6.6e-22 107.8 97 61.9
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 8.6e-22 107.5 141 46.8
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 8.6e-22 107.5 133 47.4
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 9.5e-21 104.0 126 50.8
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.6e-20 103.2 134 43.3
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.1e-16 90.5 151 40.4
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.2e-15 87.0 101 51.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.6e-15 85.1 101 50.5
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.1e-12 76.3 108 45.4
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 9.2e-08 60.8 43 65.1
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 1.2e-07 60.5 98 40.8
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 2.1e-07 59.7 129 35.7
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 4.6e-07 58.5 53 50.9
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 3.9e-06 55.5 82 42.7
AagrBONN_evm.TU.Sc2ySwM_340.382 Anthoceros agrestis HOM05D005924 ORTHO05D007290 8.6e-06 54.3 138 31.2


User provided reference genes

Program Settings