Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.9e-194 679.9 325 100.0
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.2e-175 619.8 296 99.7
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 6.6e-174 614.0 296 98.6
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 4.0e-171 604.7 296 96.3
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.1e-157 560.1 296 89.5
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.1e-147 526.9 298 81.5
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.8e-147 526.2 296 82.8
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 9.0e-147 523.9 296 82.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.5e-146 523.1 251 100.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.3e-145 520.0 301 81.1
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.3e-145 520.0 296 83.1
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 3.8e-145 518.5 304 80.3
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.6e-143 513.1 311 77.2
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.6e-143 513.1 311 77.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 2.1e-143 512.7 295 80.3
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.0e-142 510.4 296 80.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 6.7e-142 507.7 303 79.2
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 6.7e-142 507.7 296 80.1
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.1e-141 506.9 296 79.4
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.3e-141 505.4 301 78.7
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 3.3e-141 505.4 296 80.1
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 5.7e-141 504.6 307 77.9
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 7.4e-141 504.2 301 78.4
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 7.4e-141 504.2 296 79.1
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 7.4e-141 504.2 296 78.7
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.3e-140 503.4 303 76.9
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 4.8e-140 501.5 299 78.6
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 6.3e-140 501.1 296 78.7
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 8.2e-140 500.7 299 77.9
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 8.2e-140 500.7 303 78.2
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.8e-139 499.6 299 78.3
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.4e-139 499.2 296 78.7
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.4e-139 499.2 303 76.9
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.3e-139 498.0 299 78.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 6.9e-139 497.7 298 77.5
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.2e-138 496.9 303 77.2
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.0e-138 496.1 301 78.7
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.6e-138 495.7 300 78.3
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 4.5e-138 495.0 313 75.4
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 5.9e-138 494.6 296 77.4
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.9e-138 494.6 296 77.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 5.9e-138 494.6 307 76.5
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-137 493.8 296 77.0
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-137 493.8 296 77.0
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.7e-137 493.0 296 76.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.2e-137 492.7 303 76.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-137 491.9 296 76.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 6.5e-137 491.1 300 76.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.4e-136 490.0 296 78.0
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.4e-136 490.0 301 77.1
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.4e-136 490.0 307 75.9
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.9e-136 489.6 307 74.9
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 3.2e-136 488.8 296 77.4
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 7.2e-136 487.6 298 77.2
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.6e-135 486.5 301 75.7
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.1e-135 486.1 296 77.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.7e-135 485.7 298 76.5
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 3.6e-135 485.3 304 76.0
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 3.6e-135 485.3 358 67.3
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 4.7e-135 485.0 296 77.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 7.9e-135 484.2 298 76.2
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.0e-134 483.8 300 76.7
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-134 483.4 300 75.0
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.4e-134 483.4 296 76.4
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.3e-134 482.6 300 76.3
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.0e-134 482.3 295 76.9
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 6.7e-134 481.1 296 76.4
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.1e-133 480.3 300 75.3
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.1e-133 480.3 299 73.9
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.3e-133 478.8 296 74.3
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 3.3e-133 478.8 304 74.0
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 5.7e-133 478.0 304 74.0
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 5.7e-133 478.0 300 75.3
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 7.4e-133 477.6 297 73.7
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 9.7e-133 477.2 296 74.0
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 9.7e-133 477.2 296 74.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.3e-132 476.9 296 75.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.3e-132 476.9 296 74.7
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.7e-132 476.5 300 74.7
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 6.3e-132 474.6 296 75.0
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 8.2e-132 474.2 296 75.3
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-131 473.8 296 75.3
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-131 473.8 296 75.3
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.1e-131 473.8 296 75.3
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.8e-131 473.0 296 75.0
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 2.4e-131 472.6 296 76.0
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 2.4e-131 472.6 297 74.4
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.1e-131 472.2 296 75.0
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 4.1e-131 471.9 300 74.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 2.0e-130 469.5 296 74.7
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 2.6e-130 469.2 296 74.3
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 2.6e-130 469.2 296 74.3
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 5.9e-130 468.0 296 74.7
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.3e-129 466.8 307 72.0
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.2e-129 466.1 300 73.3
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 5.0e-129 464.9 296 74.3
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 2.5e-128 462.6 296 72.3
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.2e-128 461.8 289 74.4
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.6e-127 459.9 299 71.9
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.7e-127 458.4 303 73.6
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 8.0e-127 457.6 299 71.9
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 6.7e-126 454.5 320 69.1
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 7.5e-125 451.1 301 70.8
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.7e-122 442.6 296 70.6
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.7e-119 431.8 296 69.3
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 9.8e-117 424.1 296 69.9
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.4e-115 420.2 305 67.2
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 5.4e-115 418.3 320 65.9
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 2.5e-112 409.5 297 64.3
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.2e-109 400.6 227 81.1
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.4e-109 399.1 354 57.1
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-108 394.8 188 99.5
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-108 394.8 188 99.5
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.4e-107 392.9 227 80.6
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 9.2e-107 391.0 300 61.3
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.2e-106 390.6 297 58.9
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.9e-105 386.0 188 98.4
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 3.4e-101 372.5 320 57.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.6e-98 363.6 227 75.8
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.1e-94 349.4 191 84.3
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 7.3e-88 328.2 176 86.4
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 3.1e-86 322.8 228 65.4
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 1.1e-72 277.7 143 90.9
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.6e-71 273.9 143 88.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-70 269.2 143 86.0
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 3.2e-67 259.6 143 83.2
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.1e-66 256.9 159 74.2
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 2.7e-66 256.5 154 79.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.5e-66 256.1 123 99.2
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 3.9e-65 252.7 300 42.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.6e-63 247.3 135 86.7
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 8.1e-63 245.0 141 84.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 2.4e-62 243.4 258 46.5
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.8e-55 219.2 106 100.0
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 8.4e-52 208.4 112 89.3
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.1e-51 208.0 315 38.7
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.1e-49 199.1 102 92.2
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.2e-42 177.9 106 78.3
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.0e-42 175.6 271 37.6
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 3.7e-39 166.4 139 55.4
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-38 164.9 111 74.8
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.8e-33 147.5 91 73.6
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.9e-30 135.6 65 100.0
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 3.1e-22 110.2 52 88.5
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.1e-22 109.8 67 74.6
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 2.6e-21 107.1 87 59.8


User provided reference genes

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