Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.3e-112 407.9 193 100.0
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.0e-110 400.2 194 99.0
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.0e-110 400.2 194 99.0
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-105 386.0 188 98.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-105 386.0 188 98.4
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.1e-87 325.9 159 97.5
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-87 325.9 159 97.5
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 9.0e-86 320.5 159 95.0
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 2.7e-82 308.9 159 91.2
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.4e-80 300.8 159 88.7
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 9.7e-80 300.4 159 88.1
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.1e-78 297.0 159 87.4
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.4e-78 296.6 159 87.4
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 3.1e-78 295.4 159 85.5
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.9e-78 294.3 159 85.5
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.9e-78 294.3 159 85.5
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.6e-77 292.4 159 85.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 3.4e-77 292.0 159 84.9
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 4.5e-77 291.6 160 86.2
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 4.5e-77 291.6 159 84.9
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 5.9e-77 291.2 159 85.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 5.9e-77 291.2 159 84.9
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 7.7e-77 290.8 159 86.2
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-76 290.4 159 86.8
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.7e-76 289.7 159 84.3
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.2e-76 289.3 159 86.2
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 3.8e-76 288.5 159 83.6
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-76 288.5 159 83.6
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-76 288.5 159 83.6
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-76 288.5 159 83.6
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-76 288.5 159 83.6
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 3.8e-76 288.5 170 81.2
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 5.0e-76 288.1 159 84.9
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 5.0e-76 288.1 159 84.9
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 5.0e-76 288.1 159 84.9
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 5.0e-76 288.1 158 85.4
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 5.0e-76 288.1 159 86.8
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 6.5e-76 287.7 159 86.8
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 6.5e-76 287.7 159 83.6
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 6.5e-76 287.7 159 85.5
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.5e-76 287.7 159 83.6
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-75 287.0 159 83.0
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.9e-75 286.2 159 84.9
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-75 286.2 159 86.2
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.2e-75 285.4 159 83.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 4.2e-75 285.0 159 84.9
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 7.2e-75 284.3 160 84.4
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.2e-74 283.5 159 83.6
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.2e-74 283.5 159 84.3
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 2.1e-74 282.7 159 82.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 2.1e-74 282.7 159 83.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 6.1e-74 281.2 159 81.8
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 6.1e-74 281.2 159 83.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 6.1e-74 281.2 159 82.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 7.9e-74 280.8 159 82.4
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 7.9e-74 280.8 161 82.0
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 7.9e-74 280.8 159 83.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-73 280.4 159 83.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.0e-73 280.4 159 83.0
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.0e-73 280.4 159 81.8
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.4e-73 280.0 159 83.6
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.4e-73 280.0 159 83.0
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.4e-73 280.0 159 82.4
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.8e-73 279.6 159 82.4
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.8e-73 279.6 159 81.8
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.8e-73 279.6 159 80.5
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.3e-73 279.3 159 83.0
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.0e-73 278.9 159 81.8
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 3.0e-73 278.9 178 75.8
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.0e-73 278.9 158 82.9
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 3.9e-73 278.5 159 81.8
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 3.9e-73 278.5 159 83.6
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 5.1e-73 278.1 160 81.2
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 6.7e-73 277.7 159 82.4
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.1e-72 276.9 159 82.4
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.5e-72 276.6 159 81.8
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.5e-72 276.6 159 81.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.5e-72 276.6 159 80.5
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.0e-72 276.2 159 83.0
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 4.3e-72 275.0 159 81.8
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 7.4e-72 274.2 159 79.2
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 7.4e-72 274.2 159 79.2
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.3e-71 273.5 165 79.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.3e-71 273.5 159 81.1
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.7e-71 273.1 159 83.0
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 2.2e-71 272.7 159 77.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.2e-71 272.7 159 81.1
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.8e-71 272.3 159 81.8
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.7e-71 271.9 159 81.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.7e-71 271.9 159 81.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.7e-71 271.9 159 81.1
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.7e-71 271.9 159 81.1
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.7e-71 271.9 159 81.8
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 4.8e-71 271.6 159 79.2
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 6.3e-71 271.2 159 81.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 6.3e-71 271.2 159 81.1
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 6.3e-71 271.2 159 81.8
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.1e-70 270.4 159 81.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.8e-70 269.6 159 82.4
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.8e-70 269.6 159 80.5
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.4e-70 269.2 159 77.4
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.4e-70 269.2 159 77.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 3.1e-70 268.9 159 79.2
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 4.1e-70 268.5 159 78.6
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 4.1e-70 268.5 143 89.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 6.9e-70 267.7 159 77.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 9.1e-70 267.3 159 80.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 9.1e-70 267.3 159 80.5
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.2e-69 266.9 159 79.9
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 4.5e-69 265.0 159 78.6
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 5.9e-69 264.6 159 79.9
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 5.9e-69 264.6 160 76.9
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 5.9e-69 264.6 143 86.7
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.7e-68 263.1 159 77.4
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.9e-68 262.3 159 79.2
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.4e-67 260.0 143 84.6
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-66 256.1 123 99.2
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 3.0e-65 252.3 159 73.6
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.1e-64 250.4 143 81.8
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.3e-64 248.8 159 73.0
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.4e-64 248.4 159 73.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 2.6e-61 239.2 154 76.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 5.9e-61 238.0 135 85.2
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-60 235.7 141 83.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.1e-59 233.8 159 69.2
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.2e-58 230.3 160 67.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 6.1e-58 228.0 164 64.6
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 6.7e-57 224.6 136 80.1
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 6.3e-55 218.0 159 62.9
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.7e-53 211.1 159 67.3
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-52 210.3 106 98.1
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.0e-49 199.1 112 87.5
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-49 199.1 102 92.2
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.4e-40 169.1 106 76.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 2.3e-36 156.4 169 49.7
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-36 156.0 111 73.0
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.1e-34 149.8 157 47.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.8e-31 139.4 91 72.5
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.1e-30 137.5 165 46.1
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.6e-29 132.1 91 67.0
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-22 110.2 52 88.5
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.9e-19 100.1 134 39.6


User provided reference genes

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