Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.0e-56 220.3 107 100.0
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-30 135.2 65 100.0
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-30 135.2 65 100.0
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-30 135.2 65 100.0
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.5e-29 132.9 65 96.9
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 1.5e-29 132.9 65 98.5
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 6.4e-25 117.5 65 84.6
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.3e-22 109.0 65 73.8
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.1e-22 107.8 65 72.3
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.1e-21 106.7 65 75.4
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.5e-21 106.3 65 73.8
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 9.6e-21 103.6 65 72.3
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 9.6e-21 103.6 65 69.2
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 9.6e-21 103.6 65 69.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 9.6e-21 103.6 65 67.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.3e-20 103.2 65 67.7
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.3e-20 103.2 65 67.7
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.3e-20 103.2 65 70.8
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.3e-20 103.2 65 70.8
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.3e-20 103.2 65 70.8
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.6e-20 102.8 65 64.6
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 2.1e-20 102.4 65 69.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 6.2e-20 100.9 65 69.2
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 6.2e-20 100.9 65 69.2
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 6.2e-20 100.9 65 69.2
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 8.1e-20 100.5 65 66.2
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.1e-20 100.5 65 67.7
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.1e-19 100.1 65 69.2
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.4e-19 99.8 65 66.2
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.4e-19 99.8 65 67.7
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.8e-19 99.4 65 69.2
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.8e-19 99.4 65 64.6
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.8e-19 99.4 65 66.2
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 2.4e-19 99.0 65 67.7
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 3.1e-19 98.6 65 64.6
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 3.1e-19 98.6 65 64.6
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 64.6
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 4.0e-19 98.2 65 66.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 5.3e-19 97.8 65 66.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.9e-19 97.4 65 64.6
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 6.9e-19 97.4 65 67.7
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 6.9e-19 97.4 65 67.7
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 9.0e-19 97.1 65 64.6
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 9.0e-19 97.1 65 66.2
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 9.0e-19 97.1 65 66.2
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.2e-18 96.7 65 64.6
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.2e-18 96.7 65 66.2
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.2e-18 96.7 65 61.5
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.2e-18 96.7 65 61.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.5e-18 96.3 65 61.5
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.5e-18 96.3 65 64.6
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.5e-18 96.3 65 66.2
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.5e-18 96.3 65 63.1
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.0e-18 95.9 65 66.2
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.0e-18 95.9 65 61.5
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 2.0e-18 95.9 65 67.7
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.6e-18 95.5 65 61.5
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.6e-18 95.5 65 63.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.6e-18 95.5 65 69.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.6e-18 95.5 65 69.2
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 4.5e-18 94.7 65 61.5
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.5e-18 94.7 65 61.5
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 5.8e-18 94.4 65 61.5
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 5.8e-18 94.4 65 64.6
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 7.6e-18 94.0 65 61.5
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.6e-18 94.0 65 63.1
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 7.6e-18 94.0 65 66.2
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 7.6e-18 94.0 65 63.1
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.9e-18 93.6 65 63.1
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 9.9e-18 93.6 65 63.1
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.7e-17 92.8 65 61.5
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 1.7e-17 92.8 65 61.5
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.2e-17 92.4 65 63.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 2.2e-17 92.4 65 63.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 2.2e-17 92.4 65 63.1
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.2e-17 92.4 65 63.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 2.9e-17 92.0 65 61.5
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.9e-17 92.0 65 60.0
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.9e-17 92.0 65 61.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 3.8e-17 91.7 65 60.0
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.8e-17 91.7 65 60.0
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 4.9e-17 91.3 65 63.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 4.9e-17 91.3 65 58.5
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 6.4e-17 90.9 65 58.5
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 6.4e-17 90.9 65 63.1
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 8.4e-17 90.5 64 62.5
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 8.4e-17 90.5 65 61.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 8.4e-17 90.5 64 62.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 8.4e-17 90.5 64 62.5
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 8.4e-17 90.5 65 61.5
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 8.4e-17 90.5 65 61.5
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 8.4e-17 90.5 65 60.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.9e-16 89.4 65 58.5
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 4.2e-16 88.2 65 60.0
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 4.2e-16 88.2 65 60.0
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 4.2e-16 88.2 65 55.4
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 7.1e-16 87.4 65 56.9
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 7.1e-16 87.4 65 58.5
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.2e-15 86.7 65 60.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.7e-15 85.5 65 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 4.6e-15 84.7 65 53.8
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.3e-14 83.2 65 53.8
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.0e-14 82.0 65 49.2
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.9e-14 81.6 65 49.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.1e-13 80.1 65 56.9
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 3.3e-13 78.6 65 56.9
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 7.4e-13 77.4 63 52.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 9.6e-13 77.0 65 50.8
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.8e-11 72.8 68 48.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 3.1e-11 72.0 65 49.2
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.4e-08 63.2 65 38.5
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.2e-07 60.1 34 79.4
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 2.1e-07 59.3 44 59.1
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 3.5e-07 58.5 53 45.3


User provided reference genes

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