Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 1.8e-176 622.5 313 100.0
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.7e-140 502.3 318 82.1
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 9.4e-101 370.9 364 58.8
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 3.5e-71 272.7 142 95.8
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 4.3e-45 186.0 351 37.6
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-44 184.1 367 36.2
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 5.3e-43 179.1 240 44.6
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 4.5e-42 176.0 311 38.9
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.9e-39 165.2 344 36.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 3.0e-38 163.3 344 36.3
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 8.7e-38 161.8 272 38.6
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 9.6e-37 158.3 240 41.7
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 6.2e-36 155.6 317 35.6
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.1e-35 154.8 266 42.5
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 4.5e-34 149.4 344 33.4
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.2e-33 147.1 382 33.0
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 3.8e-33 146.4 256 39.1
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 1.4e-32 144.4 253 39.5
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.9e-32 144.1 262 39.7
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 4.6e-31 139.4 329 33.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.8e-30 137.5 286 36.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.1e-29 134.8 262 36.6
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 4.3e-29 132.9 245 39.6
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 9.6e-29 131.7 280 33.6
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 1.6e-28 131.0 280 33.2
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.8e-28 130.2 261 36.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 3.7e-28 129.8 201 40.3
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 6.2e-28 129.0 254 36.2
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 8.2e-28 128.6 259 35.5
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.4e-27 127.9 250 36.8
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 2.4e-27 127.1 255 38.0
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 1.5e-26 124.4 348 32.5
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.6e-26 123.6 278 33.1
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 5.8e-26 122.5 328 33.2
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 7.6e-26 122.1 224 38.8
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.0e-25 121.7 283 32.9
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 1.0e-25 121.7 281 35.6
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.3e-25 121.3 236 36.9
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 1.3e-25 121.3 261 33.0
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.3e-25 121.3 283 35.0
ClCG09G021270 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.7e-25 120.9 133 58.6
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.2e-25 120.6 224 38.4
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 2.9e-25 120.2 116 56.9
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.1e-24 118.2 244 37.3
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.1e-24 118.2 341 33.4
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.5e-24 117.1 255 34.9
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 4.2e-24 116.3 281 34.2
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.0e-22 110.2 239 35.1
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 5.1e-22 109.4 357 29.7
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.3e-20 104.8 185 36.8
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.3e-20 104.8 284 29.2
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.6e-20 104.4 183 39.3
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.2e-20 104.0 287 32.8
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 2.8e-20 103.6 262 34.0
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.7e-20 103.2 206 37.9
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.8e-19 100.9 254 31.1
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 5.3e-19 99.4 246 33.3
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 2.0e-18 97.4 119 46.2
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 3.8e-17 93.2 253 30.8
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.9e-16 90.9 212 34.4
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.9e-16 90.9 254 32.7
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 5.5e-16 89.4 258 33.3
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 3.6e-15 86.7 261 30.3
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 3.6e-15 86.7 324 27.5
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.4e-14 84.7 256 30.9
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 1.4e-14 84.7 115 40.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.1e-14 82.8 243 30.5
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.1e-14 82.8 262 28.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 9.7e-13 78.6 213 31.9
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 1.3e-12 78.2 233 33.0
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 2.8e-12 77.0 232 28.4
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 8.2e-12 75.5 227 30.4
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.6e-10 70.5 235 30.6
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 2.2e-09 67.4 268 28.7
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 3.8e-09 66.6 170 35.3
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 3.8e-09 66.6 116 34.5
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 8.5e-09 65.5 160 32.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 8.5e-09 65.5 32 71.9
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 8.5e-09 65.5 32 71.9
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 4.2e-08 63.2 32 68.8
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 4.2e-08 63.2 241 30.7
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 1.2e-07 61.6 161 29.2
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 7.9e-07 58.9 32 59.4
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 3.0e-06 57.0 32 59.4
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 3.9e-06 56.6 94 40.4
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 3.9e-06 56.6 151 29.1
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 8.8e-06 55.5 40 50.0
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 8.8e-06 55.5 65 43.1
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 8.8e-06 55.5 107 31.8


User provided reference genes

Program Settings