Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 0.0e+00 2943.7 1591 100.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 0.0e+00 2495.3 1600 86.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 0.0e+00 2082.4 1535 77.5
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1680.6 1769 59.0
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1150.6 1167 61.8
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 3.2e-136 491.1 1883 31.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 6.0e-135 486.9 1858 31.2
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.0e-131 474.2 1838 31.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 2.8e-116 424.9 1871 30.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.5e-112 411.8 1897 29.8
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 7.1e-112 410.2 1821 30.3
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.5e-106 392.5 1764 30.3
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.5e-105 387.1 1646 29.6
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.5e-104 385.2 1650 30.5
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 8.7e-102 376.7 1678 30.8
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 8.7e-102 376.7 1753 29.4
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 5.3e-99 367.5 1805 28.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.7e-97 362.5 1682 28.7
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.9e-96 359.0 1827 30.3
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 7.9e-95 353.6 1864 28.6
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.5e-93 349.4 1722 30.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.4e-93 347.1 1876 28.1
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-91 343.2 1869 28.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.4e-91 342.8 1699 29.1
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.3e-91 340.9 1871 28.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.3e-91 340.9 1753 29.1
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.5e-90 337.8 867 36.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.1e-88 333.2 1664 29.0
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 5.1e-86 324.3 821 37.9
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.4e-83 316.2 1614 28.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.3e-81 309.7 1755 28.2
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.2e-81 308.9 1799 28.1
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.9e-81 308.5 1621 28.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 5.0e-81 307.8 1633 28.2
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 9.4e-80 303.5 1622 28.8
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.1e-79 302.4 1659 28.5
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.4e-78 299.7 1825 28.3
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.8e-78 299.3 1844 27.6
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.0e-78 298.5 644 43.3
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.6e-77 295.4 916 36.0
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 8.2e-76 290.4 1722 28.1
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.7e-73 282.7 1027 29.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.2e-73 282.3 1594 29.6
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.2e-73 282.3 1702 28.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 2.2e-73 282.3 1919 26.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.9e-72 279.3 1820 27.3
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.3e-70 272.3 1736 27.1
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 8.8e-70 270.4 1759 27.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.4e-69 268.5 1766 28.6
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 5.7e-69 267.7 732 37.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.7e-68 266.2 686 39.8
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.7e-68 265.0 647 39.4
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 8.3e-68 263.8 1680 27.8
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 3.1e-67 261.9 623 40.1
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 4.1e-67 261.5 1661 27.3
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.0e-67 260.8 457 47.7
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.0e-66 259.2 1713 25.5
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 2.7e-66 258.8 623 39.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 6.5e-65 254.2 1736 26.6
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.5e-64 253.1 683 40.4
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 9.5e-64 250.4 1831 26.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.6e-63 248.4 1662 27.6
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.0e-62 246.9 1859 24.7
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 3.0e-62 245.4 1652 27.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.2e-61 243.4 1521 26.7
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.0e-61 242.7 1782 25.0
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 4.4e-61 241.5 1744 27.2
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 7.5e-61 240.7 519 44.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 3.7e-60 238.4 652 38.7
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.4e-59 235.7 1674 27.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.1e-59 235.3 1742 26.8
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.0e-58 232.6 1960 27.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 4.5e-58 231.5 353 44.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-57 229.2 1833 26.5
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.6e-57 227.3 1833 26.3
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.3e-56 224.9 621 31.4
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.2e-55 223.4 1475 26.0
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.3e-52 213.4 1703 25.2
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.5e-50 205.3 652 35.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 8.6e-49 200.7 461 44.9
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.1e-48 200.3 1684 25.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 4.7e-47 194.9 1701 25.8
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.0e-46 193.7 1649 24.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 3.7e-44 185.3 1703 26.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.1e-43 183.7 1726 25.4
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.1e-43 183.7 1765 25.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.1e-43 183.7 653 34.6
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.4e-43 181.4 1744 26.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 7.0e-43 181.0 1769 26.1
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.2e-42 180.3 704 35.4
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.0e-42 177.9 724 30.7
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.8e-42 177.6 619 29.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.0e-41 177.2 691 33.7
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.9e-41 175.3 1827 26.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 6.6e-41 174.5 1839 25.1
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 6.6e-41 174.5 704 32.7
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.5e-40 173.3 1739 25.8
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-39 169.9 607 29.7
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.6e-39 168.7 1666 24.6
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.6e-39 168.7 1733 25.9
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.0e-38 165.2 692 32.7
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.1e-35 157.1 1454 25.0
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.3e-33 150.2 691 32.7
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 3.0e-33 149.1 686 32.8
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.6e-31 143.3 307 35.5
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 4.7e-31 141.7 1861 25.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 6.2e-31 141.4 1855 23.9
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.8e-30 139.8 537 28.7
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 2.3e-30 139.4 288 34.7
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 4.0e-30 138.7 644 33.4
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 5.8e-29 134.8 1768 24.9
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.1e-27 128.6 292 35.3
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 3.5e-26 125.6 625 33.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 6.0e-26 124.8 1870 24.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 2.4e-22 112.8 659 28.5
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 6.9e-22 111.3 266 47.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 2.9e-20 105.9 275 31.3
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.3e-19 100.9 235 35.7
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.7e-17 96.7 626 26.0
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-16 94.0 85 62.4
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.8e-14 86.7 184 32.6
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 7.6e-13 81.3 329 37.4
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.9e-12 78.6 65 60.0
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 4.9e-12 78.6 45 77.8
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.4e-12 78.2 91 42.9
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-11 77.4 188 35.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.9e-11 76.6 246 29.3
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.4e-11 76.3 268 41.0
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 4.2e-11 75.5 74 54.1
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.4e-11 75.1 74 48.6
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 9.3e-11 74.3 246 28.9
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.2e-10 73.9 59 61.0
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 4.6e-10 72.0 413 26.6
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.0e-10 71.6 69 47.8
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 6.0e-10 71.6 427 26.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.3e-09 69.7 453 29.1
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.9e-08 66.6 445 27.0
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 2.5e-08 66.2 58 55.2
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.6e-07 63.5 158 37.3
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.6e-07 62.4 53 67.9
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 8.1e-07 61.2 450 24.0
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 2.4e-06 59.7 91 49.5
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.1e-06 59.3 74 43.2
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.9e-06 58.2 57 54.4


User provided reference genes

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