Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 1.0e-106 391.7 199 100.0
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 4.8e-96 356.3 199 90.5
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 3.0e-74 283.9 202 75.2
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 2.1e-51 208.0 153 68.6
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 2.7e-46 191.0 169 55.0
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.7e-45 188.3 207 51.2
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 3.0e-45 187.6 200 52.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 2.5e-44 184.5 184 51.6
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 4.3e-44 183.7 187 52.4
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 4.7e-43 180.3 182 48.9
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 1.8e-42 178.3 180 55.0
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.1e-42 177.6 190 48.9
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 6.9e-42 176.4 190 47.9
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 1.5e-41 175.3 177 50.3
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 1.5e-41 175.3 185 51.9
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 2.6e-41 174.5 161 52.2
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 4.4e-41 173.7 195 48.2
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 7.6e-41 172.9 176 48.9
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 2.9e-40 171.0 161 55.9
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 2.9e-40 171.0 172 48.8
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 4.9e-40 170.2 190 47.4
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 6.4e-40 169.9 150 58.7
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 8.4e-40 169.5 186 47.8
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 8.4e-40 169.5 186 47.8
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 1.9e-39 168.3 181 49.7
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 4.2e-39 167.2 183 47.5
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 4.2e-39 167.2 183 47.5
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 7.1e-39 166.4 202 46.0
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 9.3e-39 166.0 191 47.6
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.6e-38 165.2 191 45.5
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.6e-38 165.2 191 47.1
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 6.0e-38 163.3 195 47.7
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 1.0e-37 162.5 181 48.1
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.3e-37 162.2 192 42.7
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 1.3e-37 162.2 160 50.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.3e-37 162.2 191 47.1
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 8.7e-37 159.5 168 46.4
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.1e-36 159.1 164 45.7
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.9e-36 158.3 189 46.6
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 4.3e-36 157.1 188 46.3
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 5.6e-36 156.8 182 45.6
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 7.3e-36 156.4 199 41.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 7.3e-36 156.4 195 44.1
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.3e-35 155.6 161 49.1
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 1.3e-35 155.6 161 49.1
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 1.3e-35 155.6 195 45.1
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.6e-35 155.2 197 45.7
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.1e-35 154.8 201 42.8
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 8.1e-35 152.9 178 44.9
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.8e-34 151.8 161 48.4
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.8e-34 151.8 161 48.4
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.8e-34 151.8 161 48.4
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.8e-34 151.8 186 44.6
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.4e-34 151.4 164 43.3
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 2.4e-34 151.4 195 46.2
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 3.1e-34 151.0 172 43.6
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 6.9e-34 149.8 159 49.1
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 1.2e-33 149.1 184 46.2
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.0e-33 148.3 149 48.3
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 6.4e-32 143.3 162 43.8
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 6.4e-32 143.3 184 45.7
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 1.4e-31 142.1 160 45.0
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 2.4e-31 141.4 195 42.6
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 4.2e-31 140.6 160 45.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 7.1e-31 139.8 201 44.8
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.2e-30 139.0 197 38.6
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 2.1e-30 138.3 168 43.5
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 6.0e-30 136.7 166 44.0
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 7.9e-30 136.3 202 38.6
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.0e-29 136.0 196 40.8
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.0e-29 136.0 185 43.8
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 3.9e-29 134.0 187 43.9
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.5e-28 132.1 162 43.8
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 5.6e-28 130.2 196 40.3
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 5.6e-28 130.2 193 38.3
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.8e-27 127.9 183 39.9
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 4.8e-27 127.1 183 41.0
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.4e-26 125.6 184 39.7
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.8e-26 125.2 187 40.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 2.4e-26 124.8 193 42.0
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 3.1e-26 124.4 124 44.4
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 7.6e-25 119.8 185 42.2
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.1e-23 115.9 197 36.5
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 2.7e-22 111.3 152 40.8
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.8e-21 108.6 158 38.0
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 5.1e-21 107.1 192 37.0
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 1.9e-20 105.1 156 38.5
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 7.4e-20 103.2 166 38.0
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 6.2e-19 100.1 158 36.7
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 9.0e-18 96.3 176 35.8
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 2.3e-13 81.6 158 32.9
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 3.7e-11 74.3 151 31.8
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 3.7e-11 74.3 151 31.8
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-09 68.9 137 39.4
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.6e-09 68.2 56 51.8
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 4.5e-09 67.4 153 32.7
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 1.7e-08 65.5 151 31.1
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 1.7e-08 65.5 156 28.8
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 1.7e-08 65.5 151 29.1
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.7e-08 65.5 151 30.5
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 2.2e-08 65.1 155 31.0
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 2.9e-08 64.7 181 29.3
Lsat_1_v5_gn_1_38361 Lactuca sativa HOM05D007675 ORTHO05D009699 2.9e-08 64.7 209 30.6
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 3.8e-08 64.3 151 33.8
Psat4g195880 Pisum sativum HOM05D006931 ORTHO05D008782 3.8e-08 64.3 155 32.9
Peaxi162Scf00427g00116 Petunia axillaris HOM05D007956 ORTHO05D010152 5.0e-08 63.9 195 31.8
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 5.0e-08 63.9 151 29.8
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 6.5e-08 63.5 151 32.5
arahy.Tifrunner.gnm1.ann1.NUL68I Arachis hypogaea HOM05D002890 ORTHO05D009847 8.5e-08 63.2 154 28.6
HanXRQChr04g0128461 Helianthus annuus HOM05D007675 ORTHO05D009699 8.5e-08 63.2 160 31.2
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 8.5e-08 63.2 51 52.9
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 8.5e-08 63.2 153 26.8
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 8.5e-08 63.2 151 31.1
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 1.1e-07 62.8 151 31.1
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.1e-07 62.8 154 28.6
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 1.1e-07 62.8 151 27.8
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 1.1e-07 62.8 148 33.1
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 1.1e-07 62.8 151 31.8
Manes.14G133200 Manihot esculenta HOM05D002890 ORTHO05D009847 1.9e-07 62.0 150 28.7
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 2.5e-07 61.6 202 29.7
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 3.2e-07 61.2 151 27.8
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 4.2e-07 60.8 151 33.1
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 4.2e-07 60.8 151 29.8
arahy.Tifrunner.gnm1.ann1.59TWC6 Arachis hypogaea HOM05D002890 ORTHO05D009847 5.5e-07 60.5 154 26.6
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 5.5e-07 60.5 151 29.1
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 5.5e-07 60.5 153 24.8
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 5.5e-07 60.5 149 26.8
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 5.5e-07 60.5 149 26.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 7.2e-07 60.1 171 32.2
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 9.4e-07 59.7 213 29.1
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 1.6e-06 58.9 149 27.5
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.6e-06 58.9 150 30.0
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 1.6e-06 58.9 211 28.9
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 2.1e-06 58.5 150 29.3
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.1e-06 58.5 151 29.1
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 2.1e-06 58.5 203 29.6
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 2.1e-06 58.5 166 30.1
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 3.6e-06 57.8 197 27.4
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 3.6e-06 57.8 150 28.7
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 3.6e-06 57.8 151 30.5
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 3.6e-06 57.8 151 27.2
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 4.6e-06 57.4 151 29.1
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 4.6e-06 57.4 152 27.6
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 4.6e-06 57.4 152 27.6
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 4.6e-06 57.4 149 28.2
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 4.6e-06 57.4 149 26.2
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 4.6e-06 57.4 198 27.3
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 6.1e-06 57.0 151 29.1
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 7.9e-06 56.6 51 58.8
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 7.9e-06 56.6 151 28.5
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 7.9e-06 56.6 205 27.8


User provided reference genes

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