Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.8e-85 319.3 170 100.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.7e-57 225.7 186 72.0
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.9e-56 222.2 126 95.2
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 2.5e-47 192.6 186 65.1
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-38 163.7 126 74.6
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.1e-38 162.9 121 73.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.1e-38 162.9 125 75.2
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.8e-38 162.5 126 74.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.6e-38 162.2 126 73.8
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-37 160.2 124 73.4
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.4e-37 160.2 125 71.2
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.0e-37 158.7 127 71.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.2e-37 158.3 129 71.3
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 6.8e-37 157.9 127 73.2
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.9e-37 157.5 127 70.9
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.9e-37 157.5 127 70.9
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-36 157.1 124 71.8
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.5e-36 156.8 124 71.0
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.0e-36 156.4 128 70.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.4e-36 155.6 125 70.4
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-36 155.6 125 70.4
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-36 155.6 124 70.2
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-36 155.6 124 70.2
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.4e-36 155.2 126 70.6
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-36 154.8 129 69.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-36 154.8 124 70.2
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-35 153.7 125 69.6
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.3e-35 153.7 126 67.5
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.3e-35 153.7 124 69.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-35 153.3 127 69.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.2e-35 152.9 127 73.2
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-35 152.9 124 70.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-35 152.9 124 69.4
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.2e-35 152.9 133 67.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.9e-35 152.5 125 73.6
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 3.7e-35 152.1 124 70.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-35 152.1 124 69.4
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-35 152.1 124 70.2
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.9e-35 151.8 124 70.2
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.4e-35 151.4 127 68.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.4e-35 151.4 125 68.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.4e-34 150.2 164 59.1
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.4e-34 150.2 128 68.0
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-34 149.8 126 68.3
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-34 149.8 126 68.3
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-34 149.8 105 75.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 2.4e-34 149.4 125 68.0
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 2.4e-34 149.4 128 68.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.1e-34 148.7 100 77.0
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 5.4e-34 148.3 128 64.1
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 7.1e-34 147.9 125 67.2
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.2e-33 147.1 130 66.2
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.2e-33 147.1 126 69.0
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.2e-33 147.1 125 66.4
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.6e-33 146.7 126 65.9
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.7e-33 146.0 126 65.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.5e-33 145.6 124 68.5
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.6e-33 145.2 115 72.2
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 6.0e-33 144.8 126 66.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.0e-32 144.1 129 65.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.0e-32 144.1 127 66.1
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.7e-32 143.3 128 68.8
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.3e-32 142.9 126 66.7
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.3e-32 142.9 130 63.8
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.0e-32 142.5 129 63.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.9e-32 142.1 127 66.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.6e-32 141.4 126 66.7
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 8.6e-32 141.0 103 72.8
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.1e-31 140.6 130 62.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.1e-31 140.6 127 64.6
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-31 140.2 124 64.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 7.3e-31 137.9 126 64.3
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.3e-31 137.9 129 63.6
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.1e-30 136.3 127 64.6
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 2.8e-30 136.0 94 77.7
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.6e-30 135.6 126 64.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 4.7e-30 135.2 130 60.0
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 6.2e-30 134.8 123 63.4
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 6.2e-30 134.8 128 62.5
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 8.1e-30 134.4 129 64.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 8.1e-30 134.4 127 60.6
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.1e-29 134.0 129 60.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.4e-29 133.7 118 63.6
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.4e-29 133.7 118 63.6
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.4e-29 133.7 127 65.4
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.8e-29 133.3 127 63.0
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.8e-29 133.3 130 60.8
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.8e-29 133.3 127 63.8
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.3e-29 132.9 126 61.9
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.1e-29 132.5 126 61.9
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.1e-29 132.5 136 61.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 4.0e-29 132.1 125 60.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 6.8e-29 131.3 127 62.2
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 8.9e-29 131.0 125 61.6
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.0e-28 129.8 127 59.8
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.6e-28 129.4 125 63.2
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.6e-28 129.4 127 59.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 2.6e-28 129.4 127 63.8
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 3.4e-28 129.0 127 60.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.3e-27 127.1 113 64.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.7e-27 126.7 125 60.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.7e-27 126.7 121 62.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 4.9e-27 125.2 126 61.1
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.4e-27 124.8 127 56.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 6.4e-27 124.8 120 59.2
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 8.4e-27 124.4 157 54.1
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-26 124.0 101 68.3
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-26 124.0 126 61.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.1e-26 124.0 118 64.4
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.1e-26 124.0 129 56.6
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-26 124.0 123 59.3
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.4e-26 123.6 126 61.9
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.4e-26 123.6 126 62.7
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.4e-26 123.6 127 57.5
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.4e-26 123.6 127 59.1
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.2e-26 122.5 128 56.2
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.1e-26 122.1 125 58.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 4.1e-26 122.1 126 60.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.1e-26 122.1 126 61.1
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 5.4e-26 121.7 123 60.2
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 9.2e-26 120.9 126 57.9
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.1e-25 119.8 126 57.9
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 3.5e-25 119.0 129 59.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.3e-24 117.1 129 55.8
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.3e-24 117.1 123 56.9
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.7e-24 116.7 129 55.8
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.3e-24 116.3 126 55.6
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 3.0e-24 115.9 124 57.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 3.0e-24 115.9 129 56.6
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 3.0e-24 115.9 129 56.6
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 3.0e-24 115.9 129 56.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 3.0e-24 115.9 130 56.9
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 3.0e-24 115.9 126 58.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 3.9e-24 115.5 130 55.4
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 3.9e-24 115.5 132 54.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.9e-24 115.5 127 56.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 5.1e-24 115.2 128 56.2
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 5.1e-24 115.2 126 56.3
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 5.1e-24 115.2 126 56.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.1e-24 115.2 130 57.7
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 6.6e-24 114.8 123 56.1
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 8.6e-24 114.4 121 55.4
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 8.6e-24 114.4 110 60.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.9e-23 113.2 129 55.0
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.6e-23 111.7 124 56.5
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.6e-22 110.2 123 52.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 6.2e-22 108.2 129 55.8
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 3.4e-20 102.4 123 52.8
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 8.4e-19 97.8 118 50.0
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.9e-18 96.7 73 68.5
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.7e-16 90.1 76 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 9.6e-15 84.3 90 48.9
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.3e-14 84.0 106 50.9
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.8e-14 82.0 128 40.6
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.8e-13 80.1 53 79.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.8e-13 80.1 82 58.5
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.8e-13 80.1 126 39.7
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.8e-13 80.1 126 45.2
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 6.9e-13 78.2 54 79.6
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.0e-12 76.6 127 40.2
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.3e-11 73.9 111 45.0
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.2e-11 73.2 127 37.8
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 1.3e-06 57.4 114 38.6


User provided reference genes

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