Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.4e-229 799.3 401 100.0
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 5.1e-224 780.8 401 97.3
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 4.9e-219 764.2 415 93.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 2.1e-201 705.7 401 88.5
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 3.2e-194 681.8 401 82.0
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 1.3e-192 676.4 436 79.6
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.6e-190 669.5 401 79.8
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.1e-190 669.1 400 80.8
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.8e-190 667.9 401 80.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.4e-189 666.4 401 80.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 5.3e-189 664.5 401 80.8
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 5.8e-188 661.0 401 79.6
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 5.8e-188 661.0 402 80.8
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.8e-187 658.3 401 79.6
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 8.4e-187 657.1 401 80.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.1e-186 656.8 401 79.8
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 1.1e-186 656.8 401 79.8
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.1e-186 656.8 402 78.9
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.4e-186 656.4 401 79.3
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 3.2e-186 655.2 401 78.8
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.2e-186 655.2 401 79.6
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.7e-185 652.1 401 79.1
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 4.6e-185 651.4 402 79.1
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 7.9e-185 650.6 401 77.8
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-184 649.8 402 78.6
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 3.9e-184 648.3 401 78.6
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 5.1e-184 647.9 401 78.1
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 5.1e-184 647.9 401 78.6
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.1e-183 646.7 402 78.9
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.1e-183 646.7 394 80.5
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.1e-183 646.7 401 78.6
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.5e-183 646.4 401 78.1
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.9e-183 646.0 401 76.6
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.3e-183 644.8 401 77.8
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 3.7e-182 641.7 401 76.3
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 3.7e-182 641.7 401 76.6
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 4.8e-182 641.3 401 76.6
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 4.8e-182 641.3 402 77.9
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.3e-182 641.0 439 71.8
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 8.2e-182 640.6 401 76.6
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.4e-181 639.8 401 77.1
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 2.4e-181 639.0 401 76.8
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 3.1e-181 638.6 401 77.6
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 4.1e-181 638.3 401 76.6
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.3e-181 637.9 401 76.6
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.3e-181 637.9 411 76.9
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 5.3e-181 637.9 350 90.0
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 6.9e-181 637.5 401 77.6
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 9.0e-181 637.1 401 76.1
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 9.0e-181 637.1 401 77.3
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 1.2e-180 636.7 401 77.6
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.5e-180 636.3 401 77.3
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.0e-180 636.0 416 75.0
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 2.0e-180 636.0 401 77.1
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 2.6e-180 635.6 401 77.6
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 1.3e-179 633.3 395 77.5
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 2.9e-179 632.1 398 76.6
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 5.0e-179 631.3 431 71.7
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 6.5e-179 630.9 392 76.8
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 6.5e-179 630.9 404 77.5
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 8.5e-179 630.6 398 76.4
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.2e-178 628.6 401 76.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.2e-178 628.2 417 74.1
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 4.2e-178 628.2 401 76.1
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 7.2e-178 627.5 401 76.8
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 3.6e-177 625.2 389 78.4
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 6.1e-177 624.4 401 75.6
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.0e-176 623.6 400 76.2
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.4e-176 623.2 401 75.3
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.8e-176 622.9 402 75.9
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 5.1e-176 621.3 425 72.2
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 6.7e-176 620.9 401 75.8
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 8.8e-176 620.5 401 75.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 8.8e-176 620.5 394 77.9
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 8.8e-176 620.5 397 77.1
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.5e-175 619.8 394 77.7
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.5e-175 619.8 394 77.7
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 2.0e-175 619.4 396 76.3
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 3.3e-175 618.6 401 75.1
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 5.7e-175 617.8 401 74.8
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 5.7e-175 617.8 394 77.9
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 9.7e-175 617.1 401 76.1
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 9.7e-175 617.1 401 76.1
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.2e-174 615.9 394 76.6
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.8e-174 615.5 389 77.4
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 8.2e-174 614.0 394 76.1
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-173 612.5 409 74.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 3.1e-173 612.1 394 75.6
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 5.3e-173 611.3 394 75.6
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 9.1e-173 610.5 401 75.1
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 7.7e-172 607.4 359 81.9
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 2.9e-171 605.5 394 75.1
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 3.8e-171 605.1 400 75.5
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.9e-170 602.8 401 74.6
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 3.6e-169 598.6 491 62.9
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 4.7e-169 598.2 401 72.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 5.7e-167 591.3 394 72.3
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.7e-166 589.7 405 71.4
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.8e-166 588.2 418 69.9
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.1e-165 587.0 393 73.5
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 3.1e-165 585.5 398 71.6
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 4.1e-165 585.1 429 68.3
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 5.3e-165 584.7 409 70.7
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 5.3e-165 584.7 405 70.4
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 9.1e-165 583.9 401 72.3
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.9e-164 581.3 402 72.4
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 2.2e-163 579.3 387 72.9
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.2e-162 575.5 398 72.1
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.4e-157 559.3 403 68.5
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 3.1e-157 558.9 401 70.1
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 4.1e-157 558.5 350 77.1
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 6.5e-155 551.2 355 73.5
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.1e-153 546.2 368 73.1
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.4e-149 533.5 410 68.0
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.2e-146 521.9 396 68.2
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 8.0e-145 517.7 410 62.0
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.1e-141 507.3 414 59.7
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.0e-139 500.7 389 66.3
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 9.5e-138 494.2 312 76.9
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.6e-137 493.4 401 63.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 8.0e-137 491.1 398 60.8
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 8.6e-131 471.1 394 59.6
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 6.6e-123 444.9 394 58.6
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.2e-119 434.1 366 61.7
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.4e-117 426.4 367 61.6
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 5.8e-111 405.2 414 50.5
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 2.1e-108 396.7 247 77.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 4.7e-105 385.6 412 50.5
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 6.2e-97 358.6 201 82.6
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 6.2e-97 358.6 277 66.4
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 6.2e-97 358.6 255 71.0
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.3e-94 350.9 410 47.1
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 2.9e-94 349.7 201 84.6
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 3.8e-94 349.4 201 85.1
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 1.4e-93 347.4 441 45.1
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 7.1e-93 345.1 243 70.8
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.5e-77 293.5 402 44.0
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.6e-76 290.8 454 38.3
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.0e-67 260.0 291 51.5
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 5.7e-66 255.8 434 39.9
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 7.4e-66 255.4 158 77.2
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.7e-65 253.1 367 43.3
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.1e-60 237.3 153 71.2
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.4e-59 234.6 178 68.0
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 8.2e-57 225.3 189 65.1
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.0e-55 220.7 254 51.2
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.6e-55 220.3 215 58.1
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 4.5e-55 219.5 192 62.5
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.3e-54 218.0 339 43.4
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.7e-49 201.1 123 76.4
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.9e-46 190.3 134 69.4
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 4.0e-35 153.3 155 52.3
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 5.9e-31 139.4 276 35.1
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 5.2e-27 126.3 196 41.8
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 6.3e-25 119.4 308 29.5
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.2e-23 115.2 103 55.3
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 2.0e-23 114.4 72 75.0
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 5.9e-23 112.8 72 75.0
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 3.8e-22 110.2 66 71.2
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.2e-18 98.6 54 79.6
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 3.4e-18 97.1 52 80.8
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.2e-12 78.6 58 67.2
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.6e-12 78.2 43 76.7
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 8.0e-12 75.9 62 58.1
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.0e-10 71.2 246 28.0
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 2.2e-09 67.8 55 65.5
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 6.4e-09 66.2 54 55.6
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 5.4e-08 63.2 243 27.2
Cc10_g02440 Coffea canephora HOM05D003484 ORTHO05D004152 7.0e-08 62.8 203 26.1
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 7.0e-08 62.8 201 27.4
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.0e-07 61.2 53 54.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 6.0e-07 59.7 230 29.6
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 7.8e-07 59.3 55 56.4
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 1.3e-06 58.5 203 24.6
Peaxi162Scf00001g00369 Petunia axillaris HOM05D000783 ORTHO05D000705 3.0e-06 57.4 216 23.6
CSS0040658 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 6.6e-06 56.2 201 24.9


User provided reference genes

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