Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.7e-137 491.5 244 100.0
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 4.1e-128 461.5 244 93.4
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.6e-119 433.0 245 87.3
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.1e-69 267.3 234 59.4
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 2.2e-68 263.1 242 54.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.8e-68 262.7 230 58.3
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 4.8e-68 261.9 232 56.0
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 6.3e-68 261.5 234 56.0
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.1e-67 260.8 231 58.0
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 1.1e-67 260.8 233 57.1
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.8e-67 260.0 247 56.3
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 9.1e-67 257.7 237 55.3
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.5e-66 256.9 160 83.1
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 2.0e-66 256.5 240 54.6
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.4e-66 255.8 239 55.6
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 4.5e-66 255.4 193 62.2
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 7.7e-66 254.6 189 62.4
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 7.7e-66 254.6 232 56.0
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.0e-65 254.2 239 54.8
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.0e-65 254.2 227 56.4
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.0e-65 254.2 227 56.4
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.7e-65 253.4 226 57.1
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.7e-65 253.4 222 57.2
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.0e-65 251.9 227 55.9
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.1e-64 250.8 231 56.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.5e-64 249.6 226 57.1
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 5.5e-64 248.4 178 66.9
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.5e-64 248.4 232 54.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 3.6e-63 245.7 231 54.1
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 8.0e-63 244.6 191 59.2
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.3e-62 243.0 191 61.3
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 3.0e-62 242.7 236 54.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 3.9e-62 242.3 195 58.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 8.8e-62 241.1 227 51.5
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.6e-61 239.6 225 52.4
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 4.4e-61 238.8 174 63.8
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.7e-60 236.9 224 51.3
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.8e-60 236.1 218 56.9
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 3.7e-60 235.7 174 61.5
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 6.3e-60 235.0 228 50.4
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 8.2e-60 234.6 227 50.2
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.8e-59 233.4 192 59.4
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 4.1e-59 232.3 218 56.9
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.2e-58 230.7 210 50.0
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.2e-58 230.7 221 50.2
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 2.6e-58 229.6 210 50.5
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.6e-58 229.6 173 57.2
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.6e-58 229.6 196 55.1
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 3.5e-58 229.2 192 56.8
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 5.9e-58 228.4 224 49.1
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 5.9e-58 228.4 194 53.6
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 7.7e-58 228.0 224 49.1
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.0e-57 227.6 202 52.0
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.3e-57 227.3 224 55.4
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.7e-57 226.9 215 50.2
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.7e-57 226.9 179 54.7
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.2e-57 226.5 186 54.3
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 2.2e-57 226.5 195 51.8
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 2.2e-57 226.5 221 50.7
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 5.0e-57 225.3 207 52.2
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 5.0e-57 225.3 191 55.0
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 5.0e-57 225.3 217 50.2
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 6.5e-57 224.9 191 55.0
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-56 224.2 227 49.8
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.9e-56 223.4 204 51.5
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 2.5e-56 223.0 170 58.8
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 9.4e-56 221.1 186 54.3
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.2e-55 220.7 239 46.9
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.2e-55 220.7 170 58.8
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 6.1e-55 218.4 228 47.8
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 6.1e-55 218.4 228 47.8
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.0e-54 217.6 184 51.6
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.4e-54 217.2 170 57.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.4e-54 217.2 217 48.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.8e-54 216.9 247 45.7
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.3e-54 216.5 184 51.1
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 8.8e-54 214.5 231 47.2
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.6e-53 213.0 170 55.3
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.6e-53 213.0 170 55.3
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.4e-53 212.2 246 45.1
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.7e-52 210.3 170 54.7
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 3.7e-52 209.1 173 56.6
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 4.8e-52 208.8 183 52.5
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 3.1e-51 206.1 150 63.3
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.2e-50 204.1 225 46.2
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 2.0e-50 203.4 193 48.2
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 2.7e-50 203.0 179 52.5
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.7e-50 203.0 179 53.1
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.6e-47 193.7 198 54.0
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 5.7e-45 185.3 187 50.8
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.7e-44 182.6 174 51.1
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 6.3e-44 181.8 175 46.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 8.3e-36 154.8 187 39.0
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 1.2e-34 151.0 131 57.3
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 5.9e-34 148.7 116 60.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 3.6e-31 139.4 127 55.9
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.4e-30 137.5 171 42.1
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 3.0e-25 119.8 231 34.2
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 6.6e-25 118.6 141 37.6
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 5.6e-24 115.5 175 35.4
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 5.6e-24 115.5 158 41.1
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.7e-20 104.0 81 53.1
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-19 100.5 81 53.1
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.2e-19 98.2 84 52.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 9.2e-19 98.2 134 34.3
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.0e-17 94.7 84 53.6
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.3e-17 94.4 169 33.1
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.5e-16 90.9 163 29.4
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.6e-15 87.4 140 31.4
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.8e-14 84.0 52 67.3
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 3.1e-14 83.2 156 29.5
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 4.0e-14 82.8 95 48.4
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 4.0e-14 82.8 199 26.6
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.8e-14 82.0 226 28.3
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 6.8e-14 82.0 207 29.0
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 8.9e-14 81.6 182 28.0
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 8.9e-14 81.6 120 45.8
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.2e-13 81.3 164 29.9
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.2e-13 81.3 168 32.1
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 5.8e-13 79.0 161 28.6
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.8e-13 79.0 106 45.3
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 5.8e-13 79.0 70 47.1
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 5.8e-13 79.0 183 28.4
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 7.5e-13 78.6 142 31.0
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 9.9e-13 78.2 145 31.7
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 1.7e-12 77.4 227 29.1
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 6.4e-12 75.5 162 27.8
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 6.4e-12 75.5 248 26.2
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 8.3e-12 75.1 149 26.2
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.1e-11 74.7 162 27.2
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.9e-11 73.9 142 28.9
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 2.4e-11 73.6 139 27.3
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 3.2e-11 73.2 145 26.9
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 3.2e-11 73.2 135 25.9
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 4.1e-11 72.8 202 25.2
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 5.4e-11 72.4 139 27.3
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 5.4e-11 72.4 172 25.0
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.2e-10 71.2 172 24.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 3.5e-10 69.7 165 26.1
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 6.0e-10 68.9 162 27.8
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 6.0e-10 68.9 142 24.6
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 7.8e-10 68.6 144 28.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 7.8e-10 68.6 201 27.9
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.0e-09 68.2 146 27.4
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.7e-09 67.4 133 28.6
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 3.0e-09 66.6 140 26.4
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.9e-09 66.2 140 27.1
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 6.6e-09 65.5 135 24.4
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 1.9e-08 63.9 148 27.7
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 2.5e-08 63.5 135 25.9
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 3.3e-08 63.2 135 23.7
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 9.5e-08 61.6 145 26.2
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.2e-07 61.2 134 27.6
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.6e-07 59.7 137 27.7
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 8.1e-07 58.5 140 26.4
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 8.1e-07 58.5 151 24.5
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.1e-06 58.2 36 61.1
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.1e-06 58.2 128 23.4
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 3.1e-06 56.6 145 24.1
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 8.9e-06 55.1 166 21.1


User provided reference genes

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