Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 2169.0 1085 100.0
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 2117.0 1085 97.9
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 2016.5 1085 92.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1883.2 1115 86.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1086 81.8
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1790.4 1089 81.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1783.8 1091 81.4
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1783.8 1086 81.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1783.5 1091 81.4
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1776.5 1091 80.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1774.6 1094 81.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1773.8 1105 79.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1773.1 1092 81.1
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1770.7 1089 80.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1769.2 1089 80.7
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1765.0 1086 80.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1758.4 1091 80.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1756.9 1085 80.2
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1755.7 1089 80.3
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1751.9 1088 80.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1750.7 1085 79.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1104 79.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1749.2 1089 79.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1748.0 1096 80.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1743.4 1087 79.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1741.1 1092 79.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1736.5 1093 79.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1729.9 1093 79.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1722.6 1093 78.5
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1086 78.5
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1718.0 1133 76.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1717.2 1090 78.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1717.2 1122 76.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1094 79.2
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1709.5 1092 77.7
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1708.7 1090 77.4
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1707.2 1085 78.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1705.3 1090 78.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1704.5 1090 77.4
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1105 77.6
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1701.0 1184 73.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1699.9 1091 77.5
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1020 81.7
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1089 77.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1090 77.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1091 77.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1100 76.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1086 77.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1678.3 1086 76.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1677.9 1098 77.2
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1087 77.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1676.8 1083 77.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1676.8 1086 76.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1068 78.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1091 77.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1673.3 1086 76.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1087 77.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1029 80.1
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1669.4 1088 77.1
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1086 76.6
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1111 74.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1086 76.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1085 77.2
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1089 76.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1085 75.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1007 80.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1081 77.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1085 76.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1660.2 1033 79.5
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1086 75.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1085 76.5
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1656.7 1096 76.4
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1656.7 1086 75.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1090 76.3
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1086 76.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1651.7 1082 76.6
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1651.7 1086 76.1
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1084 76.8
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1084 76.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1086 76.9
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1084 76.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1087 75.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1083 76.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1064 77.3
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1081 76.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1086 76.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1080 75.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1091 74.8
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1641.3 1088 76.1
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1640.6 1089 76.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1088 75.9
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1638.6 1089 75.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1083 76.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1101 75.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1092 74.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1625.9 1092 74.8
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1086 74.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1617.4 1151 72.1
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1173 69.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1202 68.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1124 72.4
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1004 78.0
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1032 76.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1591.2 1087 74.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1590.9 1121 72.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1543.1 1057 72.7
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1516.5 969 77.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1492.6 1094 71.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1489.9 914 79.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1489.6 869 83.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1469.9 1017 72.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1457.2 1007 70.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1427.5 1021 67.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1402.5 1109 66.8
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1402.1 1109 66.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1377.8 958 70.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1329.3 801 81.1
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1313.5 987 65.6
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1244.6 1074 60.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1196.4 756 79.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1192.9 839 72.0
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1157.1 748 76.7
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1136.7 1062 54.7
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1135.9 722 78.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1133.2 1004 55.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1106.7 988 56.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.4e-305 1052.4 739 71.2
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 6.5e-290 1001.1 881 59.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.1e-276 955.3 895 57.9
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.1e-268 928.7 777 58.8
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 3.9e-263 912.1 582 76.1
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.6e-256 889.0 596 75.7
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 3.4e-246 855.9 973 45.5
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.2e-216 755.4 671 56.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.1e-208 730.3 646 59.1
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 9.9e-206 721.5 731 53.1
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-203 714.1 454 78.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.2e-189 667.2 418 77.8
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.8e-184 650.2 511 67.7
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.9e-179 632.1 413 74.8
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-172 610.1 532 62.0
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.4e-167 594.7 487 65.9
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.7e-163 580.5 339 86.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.2e-160 570.9 1033 37.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 9.7e-153 545.4 393 66.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 4.1e-135 486.9 393 65.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.5e-133 479.6 326 71.8
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.1e-131 474.6 411 61.3
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.0e-130 472.2 309 75.4
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.8e-113 412.5 289 74.7
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.9e-112 410.2 1016 30.5
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 9.2e-111 406.0 948 30.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.4e-106 392.1 985 29.1
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.1e-99 368.2 228 78.1
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.1e-98 364.4 907 30.1
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.9e-80 304.7 153 89.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-57 228.8 222 53.2
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.0e-56 226.5 878 23.0
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.5e-56 223.8 332 37.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-53 216.5 310 44.5
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 5.5e-47 194.1 124 79.0
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.8e-42 179.1 163 59.5
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 4.1e-42 177.9 152 59.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.0e-41 175.6 220 50.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.6e-41 175.3 171 54.4
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.5e-39 168.7 273 37.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.6e-38 166.0 461 27.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.3e-35 156.4 149 55.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.1e-34 153.3 135 59.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.3e-32 146.4 162 44.4
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.4e-31 142.9 159 53.5
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.7e-27 129.4 429 24.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.2e-25 123.2 111 55.9
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-24 119.0 137 55.5
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 9.7e-20 103.6 279 25.1
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.5e-15 87.8 57 70.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-14 85.9 83 53.0
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 3.4e-12 78.6 43 90.7
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 9.8e-12 77.0 56 64.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.2e-11 75.9 51 66.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 3.7e-11 75.1 48 72.9
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 8.3e-11 73.9 130 42.3
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-10 73.2 77 48.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 6.6e-08 64.3 36 83.3


User provided reference genes

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