Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 0.0e+00 1498.8 801 100.0
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 0.0e+00 1331.2 803 88.7
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 0.0e+00 1115.9 812 77.0
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 8.3e-202 708.0 646 66.6
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.6e-104 384.8 824 37.7
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 6.6e-98 362.8 825 36.6
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.7e-96 356.7 815 38.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 9.8e-94 349.0 821 37.4
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.8e-94 349.0 821 37.4
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.9e-93 347.4 820 36.1
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 8.3e-93 345.9 830 36.3
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.4e-92 343.2 826 36.8
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-91 341.3 825 36.8
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-88 331.6 858 35.9
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.2e-87 326.6 610 41.6
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.6e-83 315.1 770 35.7
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.6e-83 313.5 829 33.9
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.1e-80 304.7 816 35.8
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 6.2e-80 303.1 813 35.7
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.8e-79 301.6 826 35.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.0e-79 300.4 827 35.1
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 8.9e-79 299.3 803 34.7
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.9e-79 299.3 831 34.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 2.6e-78 297.7 777 35.5
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.4e-76 290.0 834 33.6
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 4.6e-75 287.0 820 33.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 6.0e-75 286.6 810 33.6
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 6.0e-75 286.6 677 36.2
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.6e-74 283.1 860 33.6
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 8.7e-74 282.7 815 34.0
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.6e-70 271.2 755 34.7
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 9.9e-70 269.2 829 31.8
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 4.9e-69 266.9 807 31.5
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 8.4e-69 266.2 614 36.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-67 261.9 811 33.4
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.6e-67 260.4 616 36.0
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.0e-66 257.7 806 33.5
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.9e-65 255.0 799 32.8
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.1e-64 251.5 663 33.9
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 2.8e-64 251.1 808 31.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.6e-64 250.8 836 32.9
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.8e-63 248.4 600 36.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.8e-63 248.4 842 30.2
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 6.9e-63 246.5 809 32.5
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 7.6e-62 243.0 807 32.7
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.9e-62 242.7 669 33.9
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.3e-61 242.3 815 31.4
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.9e-61 241.1 790 33.5
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 3.8e-61 240.7 627 33.5
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 8.4e-61 239.6 796 32.4
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.1e-60 239.2 846 32.5
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-60 238.8 800 30.4
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 3.2e-60 237.7 811 31.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 4.6e-59 233.8 627 33.5
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.7e-58 229.9 629 34.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.1e-57 229.2 788 29.7
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 3.3e-57 227.6 854 29.5
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.3e-57 227.6 787 30.7
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 4.3e-57 227.3 807 29.7
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.8e-56 224.6 807 30.0
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 2.8e-56 224.6 645 33.8
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 2.8e-56 224.6 806 29.7
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 4.8e-56 223.8 800 30.6
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 6.2e-56 223.4 807 29.4
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 8.1e-56 223.0 788 30.1
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.9e-55 219.9 802 30.8
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.2e-54 219.2 783 31.2
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 7.6e-54 216.5 692 31.9
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 6.4e-53 213.4 814 29.4
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 6.4e-53 213.4 822 29.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 3.2e-52 211.1 607 33.6
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 5.5e-52 210.3 603 33.0
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.3e-50 204.9 830 29.2
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 5.1e-50 203.8 308 42.2
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 6.7e-50 203.4 814 31.0
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-47 195.7 842 28.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.4e-47 195.7 791 27.9
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 2.4e-47 194.9 694 32.0
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 6.9e-47 193.4 832 29.1
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 5.8e-46 190.3 211 50.7
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.0e-45 189.5 628 31.8
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.8e-45 187.6 816 29.7
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 6.5e-45 186.8 507 32.5
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.5e-44 184.9 610 33.1
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 2.5e-44 184.9 812 29.1
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-44 184.5 231 47.2
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 9.3e-44 183.0 815 29.4
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.6e-43 182.2 627 32.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 7.9e-43 179.9 633 32.2
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.8e-42 178.7 656 30.3
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 3.9e-42 177.6 635 32.0
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.1e-41 176.0 610 33.0
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.1e-41 176.0 320 37.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.5e-41 174.9 281 41.6
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 3.3e-41 174.5 789 27.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 4.8e-40 170.6 314 37.6
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 6.3e-40 170.2 788 29.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-39 169.5 606 32.5
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 2.4e-39 168.3 608 31.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-39 168.3 724 30.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 3.1e-39 167.9 837 27.4
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.1e-39 167.9 304 40.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.0e-39 166.4 793 28.8
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.4e-38 164.5 738 29.0
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 5.9e-38 163.7 611 32.1
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.0e-37 162.9 611 32.1
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 3.8e-37 161.0 643 30.8
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.0e-34 152.9 700 29.3
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.1e-31 142.9 298 35.2
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 5.3e-31 140.6 492 31.7
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 2.6e-30 138.3 211 44.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 4.5e-30 137.5 819 25.9
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.9e-29 134.8 596 28.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.4e-28 132.5 215 44.2
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 8.8e-26 123.2 93 61.3
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 6.3e-24 117.1 273 33.7
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.5e-22 112.5 239 37.7
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 2.6e-22 111.7 215 38.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.2e-20 104.4 139 48.9
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 4.8e-16 90.9 89 51.7
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.6e-14 85.1 112 55.4
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.0e-13 83.2 152 38.8
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 8.5e-13 80.1 56 60.7
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 5.7e-09 67.4 71 50.7
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 2.0e-06 58.9 78 44.9


User provided reference genes

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