Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.4e-102 376.3 189 100.0
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.5e-97 357.5 191 95.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.7e-95 351.3 189 92.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 4.1e-91 338.2 190 89.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-85 318.9 189 84.7
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.7e-84 315.1 186 81.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.1e-83 312.0 189 80.4
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.6e-82 309.7 189 79.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.0e-82 309.3 174 85.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.3e-81 306.6 189 78.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-80 303.5 188 77.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-80 303.1 189 77.8
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.5e-80 303.1 188 78.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.5e-80 302.4 188 77.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.2e-80 301.6 188 76.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.5e-80 301.2 187 78.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.2e-79 300.1 187 78.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.1e-79 299.3 187 78.6
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.8e-79 298.9 186 78.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.8e-79 298.9 196 74.5
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-79 298.9 196 74.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.6e-79 298.5 186 78.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.7e-79 298.1 188 77.1
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.1e-79 297.7 189 76.2
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 4.0e-78 295.0 190 75.8
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.0e-78 295.0 186 77.4
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.8e-78 294.3 189 76.2
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.5e-77 293.1 186 72.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.0e-77 292.7 186 77.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.4e-77 291.6 173 81.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.7e-77 291.2 188 73.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 7.5e-77 290.8 176 78.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 9.8e-77 290.4 186 76.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 9.8e-77 290.4 186 76.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-76 290.0 186 76.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.7e-76 289.7 186 76.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.7e-76 289.7 186 76.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.2e-76 289.3 186 76.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.2e-76 289.3 173 80.3
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.2e-76 289.3 186 76.3
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.7e-76 288.5 173 81.5
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.3e-76 287.7 175 78.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 8.3e-76 287.3 183 73.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.4e-75 285.8 186 74.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.1e-75 285.4 186 73.1
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 4.1e-75 285.0 174 77.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.4e-75 284.6 184 75.5
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.0e-75 284.3 163 82.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.2e-74 283.5 186 73.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.7e-74 282.3 186 72.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.5e-74 281.6 173 76.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 5.9e-74 281.2 186 73.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 7.8e-74 280.8 174 78.7
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.0e-73 280.4 172 79.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.0e-73 280.4 172 77.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.7e-73 279.6 173 78.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.7e-73 279.6 182 74.7
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.3e-73 279.3 185 73.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.0e-73 278.1 173 77.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.0e-73 278.1 173 77.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 6.6e-73 277.7 173 76.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.6e-73 277.7 188 71.3
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 8.6e-73 277.3 158 84.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 4.3e-72 275.0 184 72.8
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 76.9
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 5.6e-72 274.6 175 73.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 7.3e-72 274.2 184 72.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 9.5e-72 273.9 182 73.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-71 273.1 173 75.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-71 272.7 185 71.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.6e-71 271.9 171 74.9
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.7e-71 271.6 184 72.3
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 6.1e-71 271.2 185 69.2
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.0e-71 270.8 183 69.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-70 270.0 185 70.3
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.8e-70 269.6 185 68.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-70 269.2 185 69.2
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.1e-70 268.9 173 73.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.1e-70 268.9 185 68.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 3.1e-70 268.9 185 68.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 8.9e-70 267.3 170 76.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 8.9e-70 267.3 169 75.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.0e-69 266.2 173 72.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.6e-69 265.8 187 72.2
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.4e-69 265.0 173 72.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.8e-69 264.6 175 70.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 9.8e-69 263.8 156 81.4
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.9e-68 262.3 163 77.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.4e-68 261.2 164 73.8
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.4e-67 259.2 160 76.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.0e-67 257.7 162 75.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 7.0e-67 257.7 187 68.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.2e-67 257.3 168 74.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.2e-66 256.9 173 70.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.6e-66 256.5 163 72.4
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.5e-66 255.4 184 61.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.0e-65 251.5 162 74.1
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 5.0e-65 251.5 160 75.6
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.6e-65 251.1 173 68.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.1e-64 250.4 158 74.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-64 249.6 158 75.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-64 249.6 158 75.3
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.9e-64 249.6 173 71.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-64 249.6 170 72.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.9e-64 249.6 160 75.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-64 248.8 160 74.4
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.2e-63 246.9 160 71.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.6e-63 246.5 172 70.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 6.2e-63 244.6 168 69.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.0e-63 244.2 176 69.3
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.1e-62 243.8 157 72.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.1e-62 243.8 173 65.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.4e-62 243.4 170 68.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.8e-62 243.0 173 68.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.3e-62 242.7 160 71.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.2e-62 241.5 171 70.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.4e-61 238.8 159 71.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.4e-61 238.4 173 66.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.4e-61 238.4 160 71.2
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.4e-61 238.4 160 71.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.8e-61 238.0 173 64.7
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-60 236.5 160 71.9
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-59 233.8 170 67.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.4e-59 233.4 175 65.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.9e-59 233.0 168 66.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 4.1e-59 231.9 174 66.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.1e-59 231.9 159 66.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 7.0e-59 231.1 173 64.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 9.2e-59 230.7 161 71.4
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.2e-59 230.7 161 71.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.5e-58 228.8 161 70.8
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.5e-58 228.8 161 70.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 7.8e-58 227.6 134 77.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 5.1e-57 224.9 134 76.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.6e-57 224.2 175 64.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.5e-56 220.7 175 65.7
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.6e-55 218.8 157 67.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-54 217.2 185 58.4
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.4e-53 212.2 150 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.7e-52 209.9 160 60.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.2e-52 209.5 161 58.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.4e-52 208.0 160 62.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.4e-52 208.0 176 61.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-51 207.2 129 79.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.4e-51 206.8 166 65.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.1e-51 205.3 163 60.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.4e-51 204.9 125 80.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 6.0e-50 201.4 162 58.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.0e-49 199.1 188 53.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.6e-49 198.0 155 63.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.9e-48 196.4 160 61.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.3e-48 195.7 163 55.2
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.2e-47 193.7 188 55.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-46 190.3 129 74.4
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.8e-45 184.9 164 61.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.7e-44 183.3 159 57.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 8.4e-44 181.0 132 67.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.4e-44 181.0 125 69.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.2e-43 179.1 179 55.9
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.4e-43 178.3 169 55.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.1e-43 177.9 179 55.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 5.6e-40 168.3 142 53.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.1e-39 164.5 116 72.4
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-36 157.1 97 77.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.0e-34 148.3 90 76.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.6e-32 141.0 94 67.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.8e-30 136.7 91 68.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.0e-30 135.6 148 44.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.6e-29 132.9 171 47.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.3e-28 130.6 89 69.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 3.5e-26 122.5 73 75.3
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.1e-18 96.7 69 72.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.0e-17 92.8 79 54.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-12 77.8 69 55.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.7e-12 77.0 106 44.3
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.9e-09 65.9 36 77.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.9e-09 65.9 109 33.0
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.9e-08 63.5 80 45.0
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 7.4e-08 61.6 36 72.2
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 4.8e-07 58.9 32 78.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 8.2e-07 58.2 172 27.3
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 5.3e-06 55.5 32 75.0
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 5.3e-06 55.5 61 39.3


User provided reference genes

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