Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.9e-132 474.9 262 100.0
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 2.1e-117 426.0 250 95.6
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.7e-109 399.1 272 83.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 9.7e-99 364.0 250 84.4
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.7e-77 292.0 251 70.9
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 8.0e-77 291.2 251 71.3
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 7.4e-75 284.6 262 67.9
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 7.4e-75 284.6 252 61.9
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 2.2e-74 283.1 252 67.1
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 4.1e-73 278.9 254 68.1
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 9.1e-73 277.7 252 61.9
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 9.1e-73 277.7 258 61.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 2.0e-72 276.6 251 63.3
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 5.9e-72 275.0 252 63.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 1.7e-71 273.5 253 60.1
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 5.0e-71 271.9 254 61.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.5e-70 270.4 262 61.5
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.9e-70 270.0 254 59.8
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 2.5e-70 269.6 253 64.0
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 7.2e-70 268.1 252 59.5
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.6e-69 266.9 256 64.8
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 2.1e-69 266.5 254 62.2
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.4e-68 263.8 204 70.1
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 3.0e-68 262.7 252 59.1
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.0e-68 262.3 252 63.9
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 5.2e-68 261.9 275 57.5
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 8.8e-68 261.2 263 60.5
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 1.2e-67 260.8 251 63.3
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.5e-67 258.1 259 58.7
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 2.2e-66 256.5 200 70.5
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 2.2e-66 256.5 200 70.5
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.7e-66 255.8 252 63.9
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.7e-66 255.8 252 63.9
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 3.7e-66 255.8 251 61.8
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 4.8e-66 255.4 259 60.2
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.1e-65 254.2 256 58.6
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.1e-65 254.2 264 59.1
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 3.1e-65 252.7 253 59.7
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.1e-65 252.7 259 58.7
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 9.1e-65 251.1 200 67.0
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 1.2e-64 250.8 198 67.2
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.6e-64 250.4 253 58.5
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 2.7e-64 249.6 272 56.2
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 7.7e-64 248.1 254 57.5
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 1.3e-63 247.3 254 58.7
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.2e-63 246.5 209 67.9
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 2.2e-63 246.5 256 57.4
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 3.8e-63 245.7 265 58.5
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.5e-62 243.8 259 59.8
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.9e-62 243.4 251 62.2
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 5.5e-62 241.9 258 59.7
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 2.7e-61 239.6 272 60.3
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.4e-60 237.3 263 63.1
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 2.3e-60 236.5 261 53.6
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 3.0e-60 236.1 258 57.4
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 6.8e-60 235.0 253 55.3
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.0e-59 233.4 253 60.1
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.6e-59 233.0 250 60.8
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 9.8e-59 231.1 250 57.2
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 9.8e-59 231.1 253 55.3
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.8e-57 226.9 252 52.8
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 3.1e-57 226.1 252 58.3
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 4.1e-57 225.7 252 52.8
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 4.1e-57 225.7 252 57.5
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 9.1e-57 224.6 253 53.4
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 9.1e-57 224.6 187 67.4
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 1.2e-56 224.2 256 52.7
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-56 224.2 252 57.9
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.2e-56 224.2 253 54.5
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-56 223.8 252 57.9
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-56 223.4 252 57.9
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 2.0e-56 223.4 263 55.1
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.5e-56 222.6 252 56.7
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.7e-55 220.3 253 53.4
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.3e-55 219.9 304 52.0
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.8e-55 219.2 264 57.6
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 6.6e-55 218.4 252 54.8
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 8.6e-55 218.0 257 54.9
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.1e-54 217.6 253 54.2
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.5e-54 217.2 261 54.0
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 1.5e-54 217.2 184 66.3
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.9e-54 216.9 250 60.4
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 2.5e-54 216.5 197 62.4
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 4.2e-54 215.7 261 52.1
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 5.5e-54 215.3 257 54.9
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.1e-53 213.4 190 61.1
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 3.6e-53 212.6 270 50.0
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.0e-52 211.1 256 55.9
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-50 203.8 194 58.8
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.7e-50 203.8 194 58.8
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 8.3e-50 201.4 260 48.8
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-49 200.3 194 58.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-48 197.6 194 57.7
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.2e-48 197.6 253 50.2
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.6e-48 197.2 194 57.7
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 2.7e-48 196.4 282 52.1
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 5.9e-48 195.3 194 57.2
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 2.3e-47 193.4 136 77.2
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 2.9e-47 193.0 186 60.8
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.3e-46 189.1 226 56.2
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-45 187.6 193 56.0
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 6.1e-45 185.3 250 52.4
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 8.0e-45 184.9 250 52.4
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.2e-43 181.0 190 53.7
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 4.4e-43 179.1 132 68.9
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.8e-43 178.7 150 66.0
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 7.5e-43 178.3 135 71.1
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.3e-42 177.6 150 66.0
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 4.9e-42 175.6 252 46.4
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 8.3e-42 174.9 258 49.2
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 3.5e-40 169.5 261 45.6
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 2.9e-34 149.8 174 51.7
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.7e-34 149.4 121 67.8
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 8.3e-34 148.3 267 41.2
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.2e-32 144.4 270 41.9
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 5.1e-31 139.0 191 48.2
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 5.6e-30 135.6 200 47.0
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 7.3e-30 135.2 253 41.1
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 6.2e-29 132.1 264 42.8
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.0e-23 114.8 72 75.0
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.5e-22 110.9 189 41.8
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 2.5e-22 110.2 187 47.1
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 2.5e-22 110.2 182 44.5
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 3.3e-22 109.8 73 74.0
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.3e-18 97.8 145 49.0
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 1.1e-17 94.7 145 44.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 3.2e-17 93.2 220 35.0
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 8.7e-15 85.1 99 52.5
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 3.1e-12 76.6 75 60.0
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 9.9e-11 71.6 103 47.6
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 3.0e-07 60.1 83 47.0
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 5.1e-07 59.3 118 38.1
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 2.5e-06 57.0 106 41.5
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 2.5e-06 57.0 56 58.9
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 5.6e-06 55.8 121 36.4
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 5.6e-06 55.8 118 36.4


User provided reference genes

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