Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 2.3e-73 279.3 193 100.0
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 2.7e-58 229.2 197 87.8
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 1.3e-36 157.1 197 70.1
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.3e-23 114.0 67 70.1
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 2.4e-22 109.8 88 60.2
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 4.1e-22 109.0 77 63.6
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 4.1e-22 109.0 82 62.2
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 9.2e-22 107.8 85 58.8
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 2.0e-21 106.7 90 56.7
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 2.7e-21 106.3 71 67.6
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 2.7e-21 106.3 71 67.6
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 6.0e-21 105.1 53 77.4
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 6.0e-21 105.1 55 78.2
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 7.8e-21 104.8 71 67.6
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 1.7e-20 103.6 49 81.6
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 3.0e-20 102.8 80 61.2
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 3.9e-20 102.4 84 54.8
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 5.0e-20 102.1 80 61.2
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 5.0e-20 102.1 84 56.0
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 6.6e-20 101.7 69 68.1
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 8.6e-20 101.3 62 69.4
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 8.6e-20 101.3 84 54.8
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 1.1e-19 100.9 81 60.5
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 1.9e-19 100.1 81 56.8
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 1.9e-19 100.1 61 70.5
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 2.5e-19 99.8 88 53.4
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 4.3e-19 99.0 68 64.7
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 7.3e-19 98.2 60 65.0
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 1.2e-18 97.4 57 66.7
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 1.2e-18 97.4 67 62.7
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 2.1e-18 96.7 55 69.1
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 2.8e-18 96.3 77 58.4
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 3.6e-18 95.9 57 66.7
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 4.7e-18 95.5 86 57.0
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 6.2e-18 95.1 82 54.9
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 1.1e-17 94.4 81 53.1
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 3.1e-17 92.8 43 90.7
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 4.0e-17 92.4 60 58.3
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 1.3e-15 87.4 48 66.7
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.3e-15 87.4 49 67.3
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 1.3e-15 87.4 82 50.0
Prupe.1G370900 Prunus persica HOM05D008022 ORTHO05D010147 9.2e-14 81.3 41 78.0
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 1.6e-13 80.5 45 68.9
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 3.5e-13 79.3 45 66.7
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 6.0e-13 78.6 45 60.0
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 3.9e-12 75.9 63 52.4
unitig_8.g4921 Utricularia gibba HOM05D008022 ORTHO05D010147 6.6e-12 75.1 52 57.7
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 3.3e-11 72.8 56 53.6
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 3.3e-11 72.8 81 42.0
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 4.3e-11 72.4 40 65.0
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 4.3e-11 72.4 40 65.0
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 4.3e-11 72.4 40 65.0
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 4.3e-11 72.4 40 65.0
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 5.6e-11 72.0 61 49.2
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 5.6e-11 72.0 61 49.2
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 5.6e-11 72.0 61 49.2
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 7.3e-11 71.6 81 42.0
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 7.3e-11 71.6 81 42.0
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 9.5e-11 71.2 40 62.5
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 1.6e-10 70.5 81 42.0
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 2.8e-10 69.7 40 62.5
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 2.8e-10 69.7 81 40.7
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 3.6e-10 69.3 40 62.5
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 6.2e-10 68.6 40 60.0
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 6.2e-10 68.6 40 60.0
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 8.1e-10 68.2 40 60.0
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 1.1e-09 67.8 40 60.0
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 6.8e-09 65.1 48 60.4
CDE02G3345 Ceratophyllum demersum HOM05D008022 ORTHO05D010147 7.6e-08 61.6 42 52.4
Phvul.009G014200 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 1.4e-06 57.4 57 47.4


User provided reference genes

Program Settings