Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G004410 Cucumis sativus L. HOM05D005953 ORTHO05D004056 5.1e-35 150.6 80 100.0
ClCG07G002930 Citrullus lanatus HOM05D005953 ORTHO05D004056 1.1e-29 132.9 80 88.8
MELO3C018738.2 Cucumis melo HOM05D005953 ORTHO05D004056 2.5e-29 131.7 81 88.9
Sed0010329 Sechium edule HOM05D005953 ORTHO05D004056 1.1e-16 89.7 80 67.5
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 1.9e-13 79.0 82 61.0
Sed0015284 Sechium edule HOM05D005953 ORTHO05D004056 4.7e-12 74.3 81 69.1
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 4.7e-12 74.3 83 57.8
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 2.3e-11 72.0 85 55.3
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 5.2e-11 70.9 82 58.5
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 2.0e-10 68.9 81 54.3
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 2.0e-10 68.9 85 50.6
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 3.3e-10 68.2 80 53.8
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 4.4e-10 67.8 81 54.3
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 7.5e-10 67.0 83 53.0
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 1.7e-09 65.9 84 53.6
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 3.7e-09 64.7 81 54.3
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 4.8e-09 64.3 80 50.0
Sed0013976 Sechium edule HOM05D005953 ORTHO05D004056 4.8e-09 64.3 83 56.6
Gohir.A04G103800 Gossypium hirsutum HOM05D005953 ORTHO05D004056 6.3e-09 63.9 80 50.0
Gohir.D04G143500 Gossypium hirsutum HOM05D005953 ORTHO05D004056 6.3e-09 63.9 80 50.0
Gorai.012G128900 Gossypium raimondii HOM05D005953 ORTHO05D004056 6.3e-09 63.9 80 50.0
Oeu045817.1 Olea europaea HOM05D005953 ORTHO05D004056 8.2e-09 63.5 80 48.8
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 1.4e-08 62.8 79 51.9
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 1.4e-08 62.8 79 51.9
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 2.4e-08 62.0 81 51.9
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 3.1e-08 61.6 80 46.2
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 5.3e-08 60.8 78 48.7
Manes.12G089522 Manihot esculenta HOM05D005953 ORTHO05D004056 7.0e-08 60.5 80 48.8
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 9.1e-08 60.1 80 50.0
Nitab4.5_0002253g0010 Nicotiana tabacum HOM05D005953 ORTHO05D004056 9.1e-08 60.1 82 51.2
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 2.0e-07 58.9 80 50.0
Sopen07g028000 Solanum pennellii HOM05D005953 ORTHO05D004056 2.0e-07 58.9 80 45.0
Lalb_Chr14g0366901 Lupinus albus HOM05D005953 ORTHO05D004056 3.5e-07 58.2 82 52.4
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 3.5e-07 58.2 80 50.0
Solyc07g054060.3 Solanum lycopersicum HOM05D005953 ORTHO05D004056 3.5e-07 58.2 80 45.0
Carub.0007s1247 Capsella rubella HOM05D005953 ORTHO05D004056 4.5e-07 57.8 85 47.1
C01p24770 Brassica napus HOM05D005953 ORTHO05D004056 5.9e-07 57.4 85 45.9
HanXRQChr17g0541941 Helianthus annuus HOM05D005953 ORTHO05D004056 5.9e-07 57.4 80 48.8
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 5.9e-07 57.4 80 47.5
Potri.019G100601 Populus trichocarpa HOM05D005953 ORTHO05D004056 5.9e-07 57.4 80 48.8
PGR042G2028 Punica granatum HOM05D005953 ORTHO05D004056 5.9e-07 57.4 90 47.8
ClCG02G017620 Citrullus lanatus HOM05D005953 ORTHO05D004056 7.7e-07 57.0 83 48.2
Eucgr.A01816 Eucalyptus grandis HOM05D005953 ORTHO05D004056 7.7e-07 57.0 83 50.6
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 7.7e-07 57.0 80 47.5
PGSC0003DMG400018306 Solanum tuberosum HOM05D005953 ORTHO05D004056 7.7e-07 57.0 80 45.0
Actinidia09855 Actinidia chinensis HOM05D005953 ORTHO05D004056 1.0e-06 56.6 80 47.5
C08p10750 Brassica napus HOM05D005953 ORTHO05D004056 1.0e-06 56.6 82 47.6
BolC8t48747H Brassica oleracea HOM05D005953 ORTHO05D004056 1.0e-06 56.6 82 47.6
BraA08t33974Z Brassica rapa HOM05D005953 ORTHO05D004056 1.0e-06 56.6 80 46.2
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 1.0e-06 56.6 80 46.2
ATR0304G024 Amborella trichopoda HOM05D005953 ORTHO05D004056 1.3e-06 56.2 82 46.3
AT4G28290 Arabidopsis thaliana HOM05D005953 ORTHO05D004056 1.3e-06 56.2 88 50.0
BcaC07g38320 Brassica carinata HOM05D005953 ORTHO05D004056 1.3e-06 56.2 82 46.3
Lsat_1_v5_gn_8_134201 Lactuca sativa HOM05D005953 ORTHO05D004056 1.3e-06 56.2 80 46.2
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.7e-06 55.8 80 46.2
Peaxi162Scf00132g00229 Petunia axillaris HOM05D005953 ORTHO05D004056 1.7e-06 55.8 80 46.2
Psat0s741g0120 Pisum sativum HOM05D005953 ORTHO05D004056 1.7e-06 55.8 80 47.5
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.2e-06 55.5 80 45.0
BcaC09g50494 Brassica carinata HOM05D005953 ORTHO05D004056 2.9e-06 55.1 85 47.1
A01p19690 Brassica napus HOM05D005953 ORTHO05D004056 2.9e-06 55.1 85 47.1
BolC1t02424H Brassica oleracea HOM05D005953 ORTHO05D004056 2.9e-06 55.1 85 44.7
BraA01t01902Z Brassica rapa HOM05D005953 ORTHO05D004056 2.9e-06 55.1 85 47.1
Glyma.12G112600 Glycine max HOM05D005953 ORTHO05D004056 2.9e-06 55.1 80 47.5
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 3.8e-06 54.7 80 45.0
BcaB03g12563 Brassica carinata HOM05D005953 ORTHO05D004056 5.0e-06 54.3 85 47.1
BcaB03g12564 Brassica carinata HOM05D005953 ORTHO05D004056 5.0e-06 54.3 85 47.1
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 5.0e-06 54.3 82 45.1
Nn1g04077 Nelumbo nucifera HOM05D005953 ORTHO05D004056 5.0e-06 54.3 84 45.2
Nitab4.5_0002575g0070 Nicotiana tabacum HOM05D005953 ORTHO05D004056 5.0e-06 54.3 80 46.2
Phvul.011G114200 Phaseolus vulgaris HOM05D005953 ORTHO05D004056 5.0e-06 54.3 80 45.0
CiPaw.04G125700 Carya illinoinensis HOM05D005953 ORTHO05D004056 8.5e-06 53.5 80 43.8
ECA246G2973 Erigeron canadensis HOM05D005953 ORTHO05D004056 8.5e-06 53.5 85 45.9
Gohir.D02G180001 Gossypium hirsutum HOM05D025024 ORTHO05D004056 8.5e-06 53.5 80 46.2
Gorai.005G201700 Gossypium raimondii HOM05D025024 ORTHO05D004056 8.5e-06 53.5 81 46.9


User provided reference genes

Program Settings