Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.4e-60 236.1 122 100.0
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.4e-23 113.2 91 70.3
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 9.6e-17 90.5 92 60.9
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.6e-16 89.7 91 60.4
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 4.8e-16 88.2 67 70.1
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 9.0e-15 84.0 98 56.1
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.5e-14 83.2 57 71.9
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.5e-14 83.2 105 49.5
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 2.0e-14 82.8 104 51.0
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 9.9e-14 80.5 104 50.0
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.3e-13 80.1 106 50.9
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.3e-13 80.1 95 52.6
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.2e-13 79.3 67 64.2
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.9e-13 79.0 68 66.2
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 4.9e-13 78.2 56 75.0
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 8.4e-13 77.4 66 63.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.4e-12 76.6 56 75.0
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.9e-12 76.3 77 59.7
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.4e-12 75.9 54 74.1
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 5.4e-12 74.7 80 56.2
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-12 74.7 80 56.2
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-12 74.7 80 56.2
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-12 74.7 80 56.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 5.4e-12 74.7 55 70.9
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 7.1e-12 74.3 105 47.6
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 7.1e-12 74.3 68 61.8
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 9.3e-12 73.9 60 65.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.6e-11 73.2 59 67.8
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-11 72.8 97 51.5
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.1e-11 72.8 54 72.2
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.1e-11 72.8 101 49.5
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.7e-11 72.4 116 44.8
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 2.7e-11 72.4 91 48.4
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 2.7e-11 72.4 95 49.5
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 2.7e-11 72.4 85 48.2
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.5e-11 72.0 103 47.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.5e-11 72.0 61 67.2
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 6.0e-11 71.2 67 55.2
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 7.9e-11 70.9 109 46.8
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.0e-10 70.5 89 48.3
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.3e-10 70.1 53 67.9
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.8e-10 69.7 104 46.2
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.8e-10 69.7 101 48.5
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.3e-10 69.3 95 47.4
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.3e-10 69.3 59 61.0
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.0e-10 68.9 73 60.3
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.9e-10 68.6 103 48.5
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.1e-10 68.2 101 48.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 5.1e-10 68.2 112 44.6
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 6.7e-10 67.8 112 43.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.7e-10 67.8 97 48.5
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.7e-10 67.8 97 48.5
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.1e-09 67.0 54 61.1
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.9e-09 66.2 63 61.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 3.3e-09 65.5 119 41.2
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 3.3e-09 65.5 99 42.4
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 4.3e-09 65.1 107 44.9
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 5.6e-09 64.7 58 55.2
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 7.4e-09 64.3 62 58.1
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 9.6e-09 63.9 87 46.0
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 9.6e-09 63.9 101 46.5
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 9.6e-09 63.9 110 44.5
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 1.3e-08 63.5 43 81.4
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.3e-08 63.5 44 72.7
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.6e-08 63.2 79 53.2
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.6e-08 63.2 102 47.1
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.6e-08 63.2 102 47.1
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-08 63.2 74 47.3
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.8e-08 62.4 59 64.4
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.8e-08 62.4 59 64.4
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 4.8e-08 61.6 63 54.0
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 6.2e-08 61.2 57 57.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.4e-07 60.1 61 54.1
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.8e-07 59.7 59 61.0
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.4e-07 59.3 44 72.7
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 3.1e-07 58.9 60 55.0
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 5.3e-07 58.2 63 52.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 5.3e-07 58.2 108 38.9
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 9.0e-07 57.4 51 54.9
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 3.4e-06 55.5 72 43.1
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 4.5e-06 55.1 100 44.0
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 4.5e-06 55.1 67 43.3
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 5.8e-06 54.7 32 84.4
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 5.8e-06 54.7 45 51.1
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.8e-06 54.7 55 54.5
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 7.6e-06 54.3 55 50.9


User provided reference genes

Program Settings