Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 4.1e-210 734.6 392 100.0
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.0e-193 679.1 437 85.6
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 5.4e-154 548.1 504 65.7
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 3.9e-120 435.6 361 69.3
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 9.3e-114 414.5 437 57.0
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 8.5e-91 338.2 449 49.7
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 3.5e-84 316.2 441 47.8
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 1.0e-80 304.7 437 48.1
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 5.9e-76 288.9 443 44.2
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 4.2e-74 282.7 402 46.5
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 3.6e-73 279.6 425 44.2
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 1.4e-72 277.7 433 42.7
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 4.4e-71 272.7 465 43.2
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 9.8e-71 271.6 420 45.7
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 3.7e-70 269.6 419 44.9
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 3.7e-70 269.6 436 42.4
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 8.3e-70 268.5 435 41.4
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.1e-69 268.1 367 46.3
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 1.8e-69 267.3 443 41.5
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.8e-69 267.3 455 42.2
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 2.4e-69 266.9 442 40.7
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 2.7e-68 263.5 429 43.1
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 2.7e-68 263.5 436 41.3
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.1e-66 258.1 449 40.3
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 5.5e-66 255.8 271 53.5
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.0e-64 251.5 430 42.1
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.8e-64 250.8 404 44.1
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 5.2e-64 249.2 418 41.6
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 8.8e-64 248.4 448 40.8
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 3.1e-61 240.0 446 37.2
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 9.2e-61 238.4 419 40.8
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.6e-60 237.7 508 38.6
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 4.5e-60 236.1 510 38.8
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 9.5e-58 228.4 448 40.2
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 1.6e-57 227.6 434 40.3
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 2.1e-57 227.3 447 38.7
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 3.6e-57 226.5 409 40.3
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 1.4e-56 224.6 438 37.7
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 3.0e-56 223.4 444 39.2
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 3.4e-55 219.9 436 40.8
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 4.4e-55 219.5 438 38.4
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 7.5e-55 218.8 442 36.4
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 1.3e-54 218.0 383 39.9
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 1.7e-54 217.6 448 37.5
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.9e-54 216.9 420 41.0
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.4e-53 214.5 302 44.4
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 9.2e-53 211.8 453 36.4
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.5e-50 204.5 438 36.8
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.5e-50 204.5 395 39.0
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 3.3e-50 203.4 422 39.3
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 7.3e-50 202.2 428 35.0
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 7.3e-50 202.2 289 46.7
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 9.5e-50 201.8 433 36.3
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 1.6e-49 201.1 446 36.8
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 8.0e-49 198.7 368 39.9
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 2.3e-48 197.2 448 34.8
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 1.2e-47 194.9 210 53.3
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 9.8e-47 191.8 440 34.8
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.3e-46 191.4 464 35.8
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 3.7e-46 189.9 462 35.3
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.4e-45 186.0 257 47.9
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 5.4e-45 186.0 351 39.6
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 5.4e-45 186.0 402 36.6
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 4.6e-44 183.0 453 32.5
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 1.3e-43 181.4 407 36.1
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.3e-43 181.4 426 34.5
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 1.7e-43 181.0 441 35.4
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 3.3e-42 176.8 399 35.1
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 5.6e-42 176.0 424 34.7
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 7.3e-42 175.6 480 32.9
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.2e-41 174.9 313 37.4
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 8.1e-41 172.2 395 35.9
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.4e-40 171.4 382 38.0
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 3.1e-40 170.2 442 34.6
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 1.2e-39 168.3 459 32.7
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 2.6e-39 167.2 454 32.8
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 2.6e-39 167.2 277 41.2
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 2.6e-39 167.2 400 34.5
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.7e-38 164.5 433 34.6
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 2.4e-37 160.6 463 31.5
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 7.1e-37 159.1 454 33.0
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.6e-36 157.9 461 33.2
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 2.1e-36 157.5 400 34.0
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 1.9e-34 151.0 438 34.0
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 5.6e-34 149.4 445 32.1
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 5.6e-34 149.4 405 32.6
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 6.2e-33 146.0 405 32.6
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.5e-31 141.4 534 28.3
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 1.3e-30 138.3 436 32.1
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 4.9e-30 136.3 319 35.4
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 1.4e-29 134.8 423 31.4
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 2.4e-29 134.0 429 31.7
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 3.2e-29 133.7 319 35.4
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 5.4e-29 132.9 381 30.2
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 1.3e-27 128.3 316 33.9
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.3e-27 128.3 339 32.4
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 3.0e-27 127.1 436 30.0
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.2e-25 121.7 136 52.2
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 4.4e-23 113.2 444 30.4
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 4.4e-23 113.2 479 28.2
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 7.6e-23 112.5 108 59.3
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 1.3e-22 111.7 289 33.2
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 1.9e-21 107.8 380 30.5
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 7.1e-21 105.9 354 30.8
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 2.3e-19 100.9 435 28.3
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 5.1e-19 99.8 315 29.8
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.5e-18 98.2 90 58.9
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 9.6e-18 95.5 242 33.9
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 1.2e-15 88.6 529 24.0
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 2.2e-14 84.3 245 31.4
TAR626G0331 Trochodendron aralioides HOM05D005864 ORTHO05D006770 5.4e-13 79.7 70 57.1
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 4.6e-12 76.6 177 34.5
TPR.G1791 Trifolium pratense HOM05D005864 ORTHO05D006770 5.6e-10 69.7 70 58.6
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 7.4e-10 69.3 245 30.6
Pp3c7_5470 Physcomitrium patens HOM05D005864 ORTHO05D006770 1.3e-09 68.6 262 29.8
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.6e-09 68.2 47 66.0
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 2.0e-07 61.2 151 36.4
AagrBONN_evm.TU.Sc2ySwM_369.130 Anthoceros agrestis HOM05D005864 ORTHO05D006770 4.5e-07 60.1 218 26.1


User provided reference genes

Program Settings