Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G003710 Cucumis sativus L. HOM05D002846 ORTHO05D002692 2.5e-104 382.1 189 100.0
MELO3C018808.2 Cucumis melo HOM05D002846 ORTHO05D002692 4.8e-84 314.7 161 95.0
ClCG02G001830 Citrullus lanatus HOM05D002846 ORTHO05D002692 1.9e-56 223.0 162 75.9
Sed0021551 Sechium edule HOM05D002846 ORTHO05D002692 3.5e-26 122.5 152 56.6
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 4.3e-16 89.0 182 36.8
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 7.4e-16 88.2 193 36.8
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 7.4e-16 88.2 184 37.0
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 1.6e-15 87.0 185 36.2
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 6.2e-15 85.1 189 38.1
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 6.2e-15 85.1 181 37.0
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.4e-14 83.2 183 36.1
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 3.1e-14 82.8 192 35.9
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 4.0e-14 82.4 211 34.6
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 4.0e-14 82.4 183 36.1
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 5.3e-14 82.0 192 33.9
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 2.0e-13 80.1 185 34.6
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.6e-13 79.7 176 37.5
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 4.5e-13 79.0 180 35.6
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 7.6e-13 78.2 197 32.0
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 7.6e-13 78.2 189 33.3
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 1.0e-12 77.8 180 35.0
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 1.7e-12 77.0 178 33.1
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.7e-12 77.0 186 36.0
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.7e-12 77.0 182 36.8
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.7e-12 77.0 180 32.8
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 6.5e-12 75.1 168 36.3
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 8.4e-12 74.7 187 33.2
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 1.9e-11 73.6 182 35.2
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 1.9e-11 73.6 189 34.4
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 3.2e-11 72.8 178 34.3
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 3.2e-11 72.8 163 38.0
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 4.2e-11 72.4 197 32.0
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 5.5e-11 72.0 171 34.5
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 7.1e-11 71.6 188 32.4
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 9.3e-11 71.2 168 34.5
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 9.3e-11 71.2 190 30.0
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 1.2e-10 70.9 181 32.6
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 1.2e-10 70.9 176 33.0
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 1.6e-10 70.5 170 32.9
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 1.6e-10 70.5 172 34.3
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 2.7e-10 69.7 172 34.9
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 2.7e-10 69.7 180 34.4
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 2.7e-10 69.7 190 34.2
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 3.5e-10 69.3 223 30.0
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.5e-10 69.3 181 35.4
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 4.6e-10 68.9 166 31.9
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 6.1e-10 68.6 182 32.4
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 6.1e-10 68.6 183 32.2
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 6.1e-10 68.6 174 33.3
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 6.1e-10 68.6 175 33.1
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 6.1e-10 68.6 177 34.5
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 6.1e-10 68.6 174 32.8
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 1.0e-09 67.8 129 39.5
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.3e-09 67.4 186 32.8
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 1.3e-09 67.4 174 33.3
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 1.8e-09 67.0 117 38.5
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.8e-09 67.0 201 33.3
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 1.8e-09 67.0 184 35.3
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 3.0e-09 66.2 168 33.3
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 5.1e-09 65.5 182 32.4
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 5.1e-09 65.5 175 33.1
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 6.7e-09 65.1 174 31.6
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 6.7e-09 65.1 176 33.0
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 8.7e-09 64.7 175 32.0
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 8.7e-09 64.7 180 32.2
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.1e-08 64.3 186 32.3
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.1e-08 64.3 153 34.0
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 1.1e-08 64.3 183 32.2
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.5e-08 63.9 183 31.1
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 1.5e-08 63.9 171 31.6
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 1.9e-08 63.5 178 30.3
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 2.5e-08 63.2 184 33.2
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 2.5e-08 63.2 170 35.3
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 2.5e-08 63.2 173 32.9
Hund01143 Selenicereus undatus HOM05D002846 ORTHO05D002692 3.3e-08 62.8 160 35.0
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.3e-08 62.4 169 32.0
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 4.3e-08 62.4 174 35.1
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 5.7e-08 62.0 169 32.0
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 5.7e-08 62.0 185 30.8
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 7.4e-08 61.6 139 38.8
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 7.4e-08 61.6 167 30.5
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 9.7e-08 61.2 166 35.5
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 9.7e-08 61.2 177 33.3
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 1.3e-07 60.8 188 30.9
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 1.3e-07 60.8 188 30.9
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 1.6e-07 60.5 204 31.4
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 2.2e-07 60.1 168 32.7
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 2.8e-07 59.7 172 32.0
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 2.8e-07 59.7 153 33.3
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 2.8e-07 59.7 171 32.2
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 3.7e-07 59.3 186 30.6
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.7e-07 59.3 182 33.5
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.7e-07 59.3 189 31.2
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 3.7e-07 59.3 194 30.9
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 4.8e-07 58.9 172 33.1
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 4.8e-07 58.9 187 32.1
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 4.8e-07 58.9 180 30.0
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 4.8e-07 58.9 171 32.7
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 6.3e-07 58.5 181 29.8
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 6.3e-07 58.5 189 30.7
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 8.2e-07 58.2 184 28.8
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 8.2e-07 58.2 182 33.5
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 8.2e-07 58.2 175 32.0
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 8.2e-07 58.2 195 33.8
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 8.2e-07 58.2 185 31.4
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-06 57.8 181 31.5
Lj1A758T10 Lonicera japonica HOM05D002846 ORTHO05D002692 1.1e-06 57.8 112 39.3
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.1e-06 57.8 179 29.6
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 1.4e-06 57.4 190 30.5
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 1.4e-06 57.4 166 31.3
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 1.4e-06 57.4 169 28.4
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.4e-06 57.4 174 33.3
Lalb_Chr24g0393141 Lupinus albus HOM05D002846 ORTHO05D002692 1.4e-06 57.4 128 37.5
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.4e-06 57.4 149 32.9
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.8e-06 57.0 181 28.2
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 1.8e-06 57.0 163 30.7
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 2.4e-06 56.6 180 31.7
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 2.4e-06 56.6 190 30.5
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 2.4e-06 56.6 180 31.7
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 2.4e-06 56.6 180 31.7
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 2.4e-06 56.6 180 31.7
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 2.4e-06 56.6 170 31.2
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.4e-06 56.6 185 33.5
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 3.1e-06 56.2 190 30.5
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 3.1e-06 56.2 190 30.5
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 3.1e-06 56.2 188 29.3
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 3.1e-06 56.2 192 28.6
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 3.1e-06 56.2 188 30.3
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 4.1e-06 55.8 176 29.0
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 4.1e-06 55.8 185 29.2
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 4.1e-06 55.8 189 30.7
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 4.1e-06 55.8 210 30.5
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 4.1e-06 55.8 180 31.7
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 4.1e-06 55.8 210 30.5
Ciclev10009727m.g Citrus clementina HOM05D002846 ORTHO05D002692 4.1e-06 55.8 134 34.3
Carub.0008s1506 Capsella rubella HOM05D010845 ORTHO05D002692 5.3e-06 55.5 180 29.4
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 5.3e-06 55.5 182 31.3
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 5.3e-06 55.5 178 28.1
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 6.9e-06 55.1 188 28.2
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 6.9e-06 55.1 184 26.1
Medtr4g046870 Medicago truncatula HOM05D002846 ORTHO05D002692 6.9e-06 55.1 105 39.0
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 6.9e-06 55.1 130 36.9
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 6.9e-06 55.1 176 30.1
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 6.9e-06 55.1 185 31.4
Atru.chr2.3239 Acer truncatum HOM05D002846 ORTHO05D002692 9.0e-06 54.7 103 35.0
Lsat_1_v5_gn_8_128540 Lactuca sativa HOM05D002846 ORTHO05D002692 9.0e-06 54.7 107 39.3
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 9.0e-06 54.7 169 29.0


User provided reference genes

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