Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 3.8e-208 728.0 391 100.0
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 1.8e-178 629.4 395 86.3
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 5.2e-141 505.0 414 70.3
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 3.4e-140 502.3 418 70.3
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 3.4e-140 502.3 418 70.3
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 2.4e-109 399.8 426 58.2
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 6.1e-97 358.6 384 58.3
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 2.5e-58 230.3 432 37.7
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 2.5e-58 230.3 443 39.3
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 3.6e-57 226.5 441 40.8
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 8.8e-56 221.9 437 42.3
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 2.6e-55 220.3 438 39.3
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 3.7e-54 216.5 429 37.1
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 2.4e-53 213.8 436 36.7
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 1.6e-52 211.1 455 36.5
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 2.7e-52 210.3 435 39.5
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 1.7e-51 207.6 437 40.3
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 3.8e-51 206.5 470 33.8
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 3.8e-51 206.5 436 36.5
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 1.5e-50 204.5 466 37.1
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 1.6e-49 201.1 463 34.8
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 2.1e-49 200.7 439 36.2
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 4.7e-49 199.5 424 34.9
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 8.0e-49 198.7 443 35.4
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 1.0e-48 198.4 411 36.5
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 1.2e-47 194.9 426 36.9
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 7.5e-47 192.2 445 35.7
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 9.8e-47 191.8 440 35.7
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.3e-46 191.4 417 37.9
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 2.2e-46 190.7 422 38.2
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 2.2e-46 190.7 432 39.4
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 2.9e-46 190.3 426 37.6
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 6.4e-46 189.1 422 37.9
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 2.4e-45 187.2 416 37.0
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 3.2e-45 186.8 451 33.3
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 7.0e-45 185.7 424 37.5
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 2.0e-44 184.1 380 37.6
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 2.0e-44 184.1 407 36.4
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 2.7e-44 183.7 427 37.2
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 3.5e-44 183.3 479 32.2
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 5.9e-44 182.6 432 34.0
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 7.8e-44 182.2 427 34.2
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 1.9e-42 177.6 489 33.1
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 5.6e-42 176.0 453 32.7
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 5.6e-42 176.0 471 33.1
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 2.8e-41 173.7 432 32.4
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 5.2e-40 169.5 420 32.9
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 3.4e-39 166.8 430 34.2
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 1.7e-38 164.5 427 35.4
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 2.2e-38 164.1 434 32.5
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 8.3e-38 162.2 453 34.9
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 1.9e-37 161.0 414 33.6
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 1.9e-37 161.0 448 32.1
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 2.4e-37 160.6 451 31.9
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 3.2e-37 160.2 203 44.3
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 3.2e-37 160.2 464 34.9
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 3.2e-37 160.2 443 33.4
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 5.4e-37 159.5 412 32.8
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 5.4e-37 159.5 408 35.8
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 9.2e-37 158.7 480 32.1
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 1.2e-36 158.3 432 33.1
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 1.6e-36 157.9 480 30.8
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 2.7e-36 157.1 401 31.7
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 2.7e-36 157.1 448 32.1
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 1.7e-35 154.5 424 33.3
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 3.9e-35 153.3 441 32.0
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 8.6e-35 152.1 411 33.1
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 1.1e-34 151.8 409 34.2
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 1.1e-34 151.8 411 33.3
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 1.1e-34 151.8 409 34.2
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 4.3e-34 149.8 411 33.1
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 4.3e-34 149.8 426 31.5
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 1.2e-33 148.3 438 32.9
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 2.1e-33 147.5 417 32.6
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 2.1e-33 147.5 435 32.9
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 6.2e-33 146.0 418 33.0
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 8.1e-33 145.6 420 30.0
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.1e-32 145.2 376 33.8
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 3.1e-32 143.7 188 45.7
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 6.8e-32 142.5 420 33.1
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 8.9e-32 142.1 318 34.0
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 1.2e-31 141.7 450 31.1
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 1.2e-31 141.7 374 31.0
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 2.0e-31 141.0 222 40.1
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 2.6e-31 140.6 427 31.4
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 6.4e-30 136.0 450 30.2
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 1.1e-29 135.2 389 34.4
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 1.4e-29 134.8 460 30.9
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 2.7e-28 130.6 487 29.6
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 3.5e-28 130.2 446 32.7
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 1.3e-27 128.3 169 45.0
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 1.5e-26 124.8 242 38.4
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 1.4e-24 118.2 465 29.5
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 4.0e-24 116.7 256 34.0
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 8.9e-24 115.5 316 31.6
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 2.6e-23 114.0 452 27.4
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 1.3e-22 111.7 439 28.0
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 2.9e-22 110.5 440 29.3
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 6.4e-22 109.4 190 39.5
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 7.8e-20 102.4 173 40.5
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 6.6e-19 99.4 278 31.7
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 3.6e-17 93.6 274 32.8
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 4.2e-13 80.1 298 29.5
Mapoly0050s0110 Marchantia polymorpha HOM05D006668 ORTHO05D008252 1.7e-11 74.7 442 24.7
Haze_13262 Corylus avellana HOM05D006668 ORTHO05D008252 1.1e-10 72.0 213 31.5
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 7.3e-10 69.3 142 37.3
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 8.1e-09 65.9 138 37.0
AUR62043432 Chenopodium quinoa HOM05D006668 ORTHO05D008252 2.4e-08 64.3 127 39.4
Ah.01g015540 Amaranthus hybridus HOM05D006668 ORTHO05D008252 4.0e-08 63.5 140 40.0
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 3.4e-07 60.5 75 41.3
MELO3C029057.2 Cucumis melo HOM05D000768 ORTHO05D014712 2.9e-06 57.4 30 86.7
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 6.4e-06 56.2 204 28.9
RcHm_v2.0_Chr7g0225321 Rosa chinensis HOM05D006668 ORTHO05D008252 6.4e-06 56.2 108 38.0


User provided reference genes

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