Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 6.4e-248 861.3 876 100.0
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 5.0e-232 808.5 874 96.2
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 2.6e-196 689.9 875 89.7
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 5.4e-170 602.4 876 78.9
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 9.4e-106 389.0 905 68.7
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.8e-104 384.8 875 73.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 1.7e-99 368.2 871 71.5
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.8e-94 350.9 876 70.7
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 4.1e-93 347.1 876 71.0
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.1e-90 339.0 881 70.5
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 4.7e-89 333.6 873 66.0
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.0e-87 328.2 868 72.1
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.0e-87 328.2 871 71.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 5.7e-87 326.6 877 68.1
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.7e-84 317.8 882 69.8
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 5.9e-84 316.6 880 59.9
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.8e-83 313.9 869 70.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 5.5e-82 310.1 880 63.9
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.2e-82 309.7 875 67.0
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 9.4e-82 309.3 873 67.1
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.6e-81 308.5 879 69.4
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 6.1e-81 306.6 877 65.2
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 6.1e-81 306.6 867 70.8
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.0e-80 305.8 872 61.8
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.4e-80 305.4 879 69.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.8e-80 305.1 863 70.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 8.8e-80 302.8 875 70.2
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.5e-79 302.0 880 67.3
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 3.4e-79 300.8 879 69.2
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 5.4e-77 293.5 881 62.8
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.0e-75 289.3 875 68.6
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.0e-75 289.3 885 56.6
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.1e-74 285.8 870 68.6
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.5e-74 285.4 877 69.0
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.3e-74 284.3 870 68.9
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.6e-73 282.0 876 68.3
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 4.7e-73 280.4 881 59.7
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 4.0e-72 277.3 879 65.0
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 5.2e-72 276.9 870 68.5
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.4e-69 268.9 889 57.3
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.1e-69 267.7 880 60.2
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 4.5e-68 263.8 880 63.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.5e-68 263.8 876 60.3
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.5e-68 263.8 876 60.3
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.0e-67 262.7 872 64.7
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.7e-67 261.9 868 68.3
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 3.8e-67 260.8 868 64.7
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 8.6e-67 259.6 874 65.8
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.1e-66 259.2 880 66.9
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.1e-66 259.2 878 66.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.4e-64 252.3 893 64.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 8.9e-64 249.6 874 67.2
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-63 249.2 875 66.3
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.5e-63 248.8 798 70.7
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.3e-62 245.7 856 62.6
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.7e-62 244.2 874 66.4
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.4e-61 242.3 877 67.2
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 5.4e-61 240.4 865 64.2
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.6e-60 238.8 865 66.0
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 2.0e-60 238.4 878 65.9
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 7.8e-60 236.5 878 65.6
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 7.8e-60 236.5 878 65.5
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.5e-58 232.3 440 58.2
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 3.3e-58 231.1 874 65.9
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 5.6e-58 230.3 833 69.4
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 7.3e-58 229.9 813 66.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 7.3e-58 229.9 833 69.4
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.6e-57 227.6 870 58.4
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.7e-57 227.3 868 66.2
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.8e-56 225.3 873 65.6
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.0e-55 221.9 785 69.9
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.0e-55 221.9 881 67.1
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.7e-54 218.8 361 69.5
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.4e-53 215.7 202 56.9
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.9e-53 215.3 876 63.9
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 2.1e-52 211.8 878 66.1
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 6.0e-52 210.3 368 67.1
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.3e-51 209.1 865 66.6
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.3e-51 209.1 366 67.8
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.7e-51 208.8 874 64.5
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 2.8e-49 201.4 861 60.6
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.5e-47 195.7 368 66.3
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 7.5e-47 193.4 366 66.4
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 6.4e-46 190.3 855 62.2
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.3e-43 181.8 377 62.1
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 4.0e-40 171.0 880 61.9
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 7.6e-39 166.8 896 46.9
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 4.9e-38 164.1 863 64.4
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 4.2e-37 161.0 375 59.2
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 9.2e-37 159.8 847 52.4
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.2e-36 159.5 180 48.3
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.7e-36 158.3 178 46.1
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 7.8e-36 156.8 859 56.8
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 5.6e-34 150.6 380 58.9
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 4.8e-33 147.5 184 47.3
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 8.1e-33 146.7 874 54.0
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.4e-32 145.2 869 34.6
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.3e-30 139.4 378 56.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.7e-28 131.7 152 47.4
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.0e-27 129.8 190 42.6
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 3.6e-25 121.3 311 66.2
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.3e-22 112.8 106 54.7
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.1e-20 105.5 394 51.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 7.9e-20 103.6 155 40.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 9.3e-13 80.1 101 47.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.3e-11 76.3 112 44.6
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 1.7e-06 59.3 98 32.7
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.2e-06 58.9 60 48.3
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 2.9e-06 58.5 110 28.2


User provided reference genes

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