Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 1.7e-45 185.7 95 100.0
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 4.1e-31 137.9 74 94.6
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 4.1e-31 137.9 74 94.6
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 5.2e-26 120.9 74 86.5
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 1.1e-20 103.2 96 59.4
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 1.5e-20 102.8 86 62.8
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 1.6e-19 99.4 79 67.1
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 2.7e-19 98.6 75 70.7
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 4.7e-19 97.8 86 61.6
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 4.7e-19 97.8 74 67.6
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 6.1e-19 97.4 77 71.4
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 8.0e-19 97.1 76 68.4
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 8.0e-19 97.1 74 66.2
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.4e-18 96.3 77 64.9
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 1.8e-18 95.9 74 68.9
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.8e-18 95.9 76 67.1
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 1.8e-18 95.9 71 69.0
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 3.0e-18 95.1 72 68.1
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.0e-18 94.7 72 68.1
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 4.0e-18 94.7 80 65.0
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 5.2e-18 94.4 74 68.9
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 5.2e-18 94.4 80 62.5
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 5.2e-18 94.4 75 66.7
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 6.8e-18 94.0 71 66.2
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 1.5e-17 92.8 74 67.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.5e-17 92.8 76 67.1
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.5e-17 92.8 78 62.8
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 2.0e-17 92.4 77 66.2
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 2.6e-17 92.0 76 65.8
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 2.6e-17 92.0 85 57.6
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 3.4e-17 91.7 98 56.1
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 4.4e-17 91.3 78 62.8
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 4.4e-17 91.3 78 67.9
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 4.4e-17 91.3 74 67.6
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 5.7e-17 90.9 74 64.9
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 9.8e-17 90.1 78 61.5
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.3e-16 89.7 84 63.1
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.7e-16 89.4 78 61.5
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 1.7e-16 89.4 76 61.8
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 1.7e-16 89.4 76 61.8
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 2.2e-16 89.0 82 59.8
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 2.8e-16 88.6 74 66.2
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 2.8e-16 88.6 89 56.2
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 3.7e-16 88.2 75 62.7
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 4.8e-16 87.8 76 61.8
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 4.8e-16 87.8 73 61.6
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 4.8e-16 87.8 74 64.9
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 4.8e-16 87.8 74 64.9
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 6.3e-16 87.4 84 56.0
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 1.8e-15 85.9 74 59.5
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 2.4e-15 85.5 74 62.2
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 2.4e-15 85.5 74 59.5
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 2.4e-15 85.5 74 59.5
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 3.1e-15 85.1 76 60.5
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 3.1e-15 85.1 80 56.2
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 5.4e-15 84.3 74 62.2
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 1.2e-14 83.2 84 58.3
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 2.7e-14 82.0 75 60.0
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 4.5e-14 81.3 84 52.4
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 5.9e-14 80.9 81 54.3
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 5.9e-14 80.9 84 52.4
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 5.9e-14 80.9 80 57.5
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 1.0e-13 80.1 77 62.3
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 1.3e-13 79.7 76 59.2
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.3e-13 79.7 69 62.3
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 1.3e-13 79.7 84 51.2
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 1.7e-13 79.3 84 51.2
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 2.3e-13 79.0 76 60.5
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.9e-13 78.6 74 59.5
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 2.9e-13 78.6 60 68.3
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 3.8e-13 78.2 79 51.9
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 3.8e-13 78.2 78 51.3
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 3.8e-13 78.2 79 58.2
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 3.8e-13 78.2 79 58.2
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 5.0e-13 77.8 78 51.3
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 5.0e-13 77.8 78 51.3
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 5.0e-13 77.8 69 59.4
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 6.5e-13 77.4 53 71.7
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 6.5e-13 77.4 75 53.3
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 6.5e-13 77.4 43 81.4
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 6.5e-13 77.4 43 81.4
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 8.6e-13 77.0 81 55.6
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 1.1e-12 76.6 80 52.5
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 2.5e-12 75.5 64 62.5
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 3.2e-12 75.1 72 56.9
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 3.2e-12 75.1 40 82.5
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 3.2e-12 75.1 82 50.0
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 7.2e-12 73.9 79 51.9
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 7.2e-12 73.9 40 85.0
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 7.2e-12 73.9 55 65.5
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 9.5e-12 73.6 46 78.3
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 9.5e-12 73.6 63 57.1
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.2e-11 73.2 75 50.7
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 1.6e-11 72.8 39 82.1
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 2.8e-11 72.0 79 54.4
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 3.6e-11 71.6 77 50.6
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 6.1e-11 70.9 80 51.2
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 6.1e-11 70.9 79 53.2
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 6.1e-11 70.9 39 82.1
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 8.0e-11 70.5 54 64.8
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 8.0e-11 70.5 61 54.1
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 8.0e-11 70.5 64 56.2
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 1.8e-10 69.3 73 54.8
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 1.8e-10 69.3 80 48.8
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 1.8e-10 69.3 80 48.8
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 3.0e-10 68.6 76 47.4
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 3.0e-10 68.6 39 79.5
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 3.0e-10 68.6 56 58.9
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 1.7e-08 62.8 43 72.1
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.4e-07 59.7 45 73.3
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.4e-07 59.7 45 73.3
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 7.8e-06 53.9 46 58.7
Pp3c2_9610 Physcomitrium patens HOM05D007135 ORTHO05D008880 7.8e-06 53.9 54 48.1


User provided reference genes

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