Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 2.2e-140 502.3 251 100.0
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 4.7e-127 458.0 251 92.0
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 3.1e-102 375.6 252 78.2
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 7.9e-82 307.8 291 62.5
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 8.7e-73 277.7 293 57.0
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 4.0e-41 172.6 248 41.9
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 4.1e-38 162.5 251 42.6
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 1.2e-37 161.0 254 42.9
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 5.5e-35 152.1 251 40.2
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 8.8e-33 144.8 250 37.6
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 4.4e-32 142.5 248 39.1
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 1.3e-31 141.0 237 40.1
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 2.2e-31 140.2 249 38.6
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 8.3e-31 138.3 237 40.5
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 1.8e-30 137.1 253 38.7
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 1.2e-29 134.4 250 38.0
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 1.6e-29 134.0 247 37.7
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 7.7e-29 131.7 250 38.8
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 1.7e-28 130.6 250 36.4
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 1.5e-27 127.5 251 37.8
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 9.4e-27 124.8 248 37.5
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 3.6e-26 122.9 244 35.7
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 2.3e-25 120.2 235 34.9
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 6.8e-25 118.6 252 35.7
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.2e-24 117.9 247 34.8
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 1.5e-24 117.5 249 36.5
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 2.0e-24 117.1 250 36.0
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 2.0e-24 117.1 247 36.8
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 2.0e-24 117.1 376 28.7
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 3.4e-24 116.3 252 35.3
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 5.7e-24 115.5 236 34.3
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 9.8e-24 114.8 257 35.4
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 2.2e-23 113.6 225 34.7
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 2.8e-23 113.2 250 34.8
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 4.9e-23 112.5 248 33.5
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 1.1e-22 111.3 255 34.1
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 1.1e-22 111.3 253 33.2
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 1.4e-22 110.9 250 34.4
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 4.1e-22 109.4 247 32.8
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 4.1e-22 109.4 249 34.9
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 4.1e-22 109.4 245 31.0
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 5.4e-22 109.0 225 35.1
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 7.0e-22 108.6 229 38.0
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 7.0e-22 108.6 248 33.5
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 4.5e-21 105.9 244 34.0
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 1.0e-20 104.8 261 32.6
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 1.0e-20 104.8 267 32.2
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.1e-19 101.3 209 34.9
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 3.3e-19 99.8 246 31.7
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 5.6e-19 99.0 247 31.2
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 1.2e-18 97.8 241 33.6
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 1.2e-18 97.8 251 35.5
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 2.1e-18 97.1 250 34.4
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 2.8e-18 96.7 245 30.6
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 6.1e-18 95.5 253 31.6
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 5.2e-17 92.4 253 31.2
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 3.4e-16 89.7 247 31.2
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 4.4e-16 89.4 228 33.8
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 4.4e-16 89.4 237 30.4
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 4.4e-16 89.4 229 31.4
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 5.7e-16 89.0 329 29.5
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 1.3e-15 87.8 328 30.2
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 2.2e-15 87.0 287 29.3
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 2.2e-15 87.0 234 29.9
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 2.9e-15 86.7 236 27.5
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 3.7e-15 86.3 252 31.3
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 4.9e-15 85.9 223 30.9
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 6.4e-15 85.5 225 32.0
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 1.4e-14 84.3 259 29.7
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 1.0e-12 78.2 200 32.5
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 1.0e-12 78.2 247 29.1
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 1.3e-12 77.8 254 29.1
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 3.0e-12 76.6 278 29.9
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 3.9e-12 76.3 277 30.0
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 3.9e-12 76.3 277 30.0
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 3.9e-12 76.3 280 27.5
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 6.6e-12 75.5 272 29.4
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 1.9e-11 73.9 242 28.9
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 5.6e-11 72.4 231 30.7
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 1.6e-10 70.9 275 29.5
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 2.1e-10 70.5 273 28.6
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 2.8e-10 70.1 267 31.5
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 8.0e-10 68.6 244 27.9
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 1.0e-09 68.2 233 28.8
A08p23900 Brassica napus HOM05D011065 ORTHO05D009410 1.4e-09 67.8 274 30.3
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 1.8e-09 67.4 277 29.2
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 3.1e-09 66.6 265 30.2
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 3.1e-09 66.6 148 36.5
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 1.2e-08 64.7 274 28.8
BcaC01g00269 Brassica carinata HOM05D011065 ORTHO05D009410 2.6e-08 63.5 265 27.5
C03p77450 Brassica napus HOM05D011065 ORTHO05D009410 2.6e-08 63.5 265 27.5
BolC3t20000H Brassica oleracea HOM05D011065 ORTHO05D009410 2.6e-08 63.5 265 27.5
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 2.4e-06 57.0 241 25.7


User provided reference genes

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