Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.6e-64 249.6 261 100.0
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.3e-63 247.3 261 99.2
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.2e-61 240.7 261 98.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.9e-54 216.9 262 95.4
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-51 207.6 261 92.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-51 207.6 261 92.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 8.3e-50 201.4 260 90.4
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.4e-49 198.7 264 90.5
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 7.0e-49 198.4 261 90.4
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.2e-48 197.6 259 89.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.5e-48 195.7 262 90.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 5.9e-48 195.3 263 89.4
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 7.7e-48 194.9 261 87.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.5e-46 190.7 260 90.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 3.2e-46 189.5 261 89.3
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 5.5e-46 188.7 262 88.2
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.6e-45 187.2 261 85.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 3.6e-45 186.0 263 84.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.4e-44 184.1 262 89.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.0e-44 183.0 262 85.5
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 6.8e-44 181.8 262 86.3
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.4e-43 179.5 262 86.6
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 9.8e-43 177.9 263 87.1
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.7e-42 176.0 259 85.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.9e-42 175.6 267 85.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 6.3e-42 175.3 263 85.6
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.4e-41 174.1 262 78.2
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.0e-41 171.8 265 83.8
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 9.2e-41 171.4 280 83.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 7.7e-40 168.3 268 75.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 5.6e-38 162.2 264 81.1
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.7e-37 159.1 247 84.6
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.4e-36 157.5 262 81.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.4e-36 157.5 260 79.6
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.4e-36 157.5 263 85.6
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-36 157.1 244 82.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.8e-36 155.2 247 84.6
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 4.4e-35 152.5 257 78.6
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.9e-34 149.8 261 82.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.4e-33 146.7 262 79.8
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 9.2e-33 144.8 261 81.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.7e-32 143.3 261 78.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 5.9e-32 142.1 259 64.1
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-31 141.0 261 77.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 5.0e-31 139.0 267 56.2
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 7.3e-30 135.2 262 74.4
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.6e-29 134.0 266 75.6
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.1e-29 133.7 245 80.0
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 6.2e-29 132.1 247 78.9
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.1e-28 129.8 248 79.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.5e-27 127.5 236 82.6
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.5e-27 127.5 243 74.1
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 3.4e-27 126.3 250 79.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.4e-27 126.3 250 79.2
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.4e-27 126.3 271 73.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-27 125.2 251 78.9
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-27 125.2 249 79.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 7.5e-27 125.2 246 78.0
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 9.8e-27 124.8 269 69.9
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.7e-26 124.0 268 69.8
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.7e-26 124.0 267 67.8
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 2.2e-26 123.6 269 69.5
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.7e-26 122.9 261 71.3
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 4.9e-26 122.5 246 77.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 8.3e-26 121.7 262 74.8
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-25 121.3 249 78.7
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 7.0e-25 118.6 245 78.8
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 2.0e-24 117.1 261 75.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-23 113.2 256 73.4
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.1e-22 111.3 214 63.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 7.3e-22 108.6 280 39.6
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 7.3e-22 108.6 129 90.7
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-21 107.1 261 75.1
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.1e-20 104.8 267 74.5
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.4e-20 104.4 261 72.0
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 8.9e-20 101.7 221 79.6
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.4e-19 99.8 266 68.0
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.2e-18 97.1 239 74.9
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.9e-18 96.7 247 67.2
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 8.3e-18 95.1 246 75.2
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.1e-17 94.7 252 64.3
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 4.1e-17 92.8 251 72.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 5.4e-17 92.4 252 71.8
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-16 90.9 134 84.3
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.1e-16 90.5 144 81.2
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 4.6e-16 89.4 332 58.7
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.0e-16 89.0 248 74.2
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.3e-15 87.8 252 71.8
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.3e-15 87.8 245 73.9
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.1e-15 85.9 218 73.9
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 6.6e-15 85.5 134 82.8
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.6e-15 85.1 64 68.8
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-14 84.3 51 74.5
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 2.5e-14 83.6 247 72.9
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 5.6e-14 82.4 248 71.8
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.2e-13 81.3 246 72.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.8e-13 80.1 51 66.7
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 2.8e-13 80.1 244 68.9
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.6e-13 79.7 246 70.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.6e-13 79.7 248 43.5
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.7e-13 79.3 65 64.6
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-12 78.2 52 69.2
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 1.1e-12 78.2 156 72.4
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-12 77.8 52 69.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.4e-12 77.8 52 69.2
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.8e-12 77.4 49 69.4
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.8e-12 77.4 49 69.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.0e-12 76.3 48 70.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 6.8e-12 75.5 238 71.8
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.9e-12 75.1 51 66.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-11 74.7 44 72.7
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.5e-11 74.3 246 65.0
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.4e-11 73.2 51 64.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.4e-11 72.8 50 62.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.4e-11 72.8 65 52.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 5.8e-11 72.4 47 72.3
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.8e-11 72.4 47 72.3
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 5.8e-11 72.4 259 66.4
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 7.6e-11 72.0 51 66.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.6e-11 72.0 51 64.7
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.3e-10 71.2 217 75.6
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.3e-10 71.2 246 64.2
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.4e-09 67.8 249 65.1
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.4e-09 65.9 48 64.6
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.4e-09 65.9 135 78.5
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 7.1e-09 65.5 109 92.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.1e-09 65.5 51 60.8
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 58 53.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.6e-08 64.3 50 62.0
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 2.1e-08 63.9 73 63.0
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.7e-08 63.5 51 58.8
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 4.6e-08 62.8 106 93.4
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.6e-08 62.8 206 71.4
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 67.4
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 62.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 6.0e-08 62.4 51 58.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.0e-07 61.6 51 58.8
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-07 60.5 51 56.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.3e-07 60.5 49 53.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-07 60.5 51 56.9
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 3.0e-07 60.1 45 62.2
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.0e-07 60.1 42 64.3
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 3.0e-07 60.1 34 79.4
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 60.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.1e-07 59.3 51 56.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.6e-07 58.9 43 62.8
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 6.6e-07 58.9 48 58.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.6e-07 58.5 43 62.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.6e-07 58.5 43 62.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 8.6e-07 58.5 43 60.5
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.1e-06 58.2 50 52.0
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 43 62.8
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 1.9e-06 57.4 42 59.5
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 42 59.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 4.3e-06 56.2 35 71.4
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.3e-06 55.5 47 57.4


User provided reference genes

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