Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.2e-54 216.5 121 100.0
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 3.8e-50 201.4 121 94.2
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 1.4e-47 193.0 121 88.4
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.5e-38 162.9 121 80.2
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 7.8e-27 124.0 121 62.0
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 1.3e-26 123.2 119 64.7
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 5.0e-26 121.3 125 65.6
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 3.3e-25 118.6 122 63.1
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 4.3e-25 118.2 118 63.6
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 5.6e-25 117.9 122 63.9
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 7.3e-25 117.5 122 63.9
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 7.3e-25 117.5 122 63.9
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.2e-24 116.7 121 62.8
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.6e-24 116.3 117 64.1
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 2.8e-24 115.5 122 63.9
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.4e-23 113.2 126 57.9
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 3.1e-23 112.1 123 60.2
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 3.1e-23 112.1 125 57.6
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 3.1e-23 112.1 125 59.2
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.0e-22 109.4 123 64.2
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 2.6e-22 109.0 124 63.7
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 7.5e-22 107.5 118 64.4
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 7.5e-22 107.5 118 64.4
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 9.8e-22 107.1 122 59.8
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.3e-21 106.7 127 60.6
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 1.3e-21 106.7 121 55.4
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.7e-21 106.3 115 61.7
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.2e-21 105.9 126 55.6
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.2e-21 105.9 122 58.2
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 4.9e-21 104.8 108 64.8
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 8.3e-21 104.0 129 55.0
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 1.4e-20 103.2 122 60.7
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 2.4e-20 102.4 122 58.2
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 2.4e-20 102.4 126 56.3
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 3.2e-20 102.1 122 58.2
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 5.4e-20 101.3 123 59.3
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.2e-19 100.1 122 58.2
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.6e-19 99.8 116 54.3
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 2.7e-19 99.0 107 59.8
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 3.5e-19 98.6 124 55.6
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 3.5e-19 98.6 122 55.7
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 6.0e-19 97.8 119 58.0
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 7.8e-19 97.4 126 51.6
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 1.0e-18 97.1 121 56.2
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 2.3e-18 95.9 122 56.6
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 3.9e-18 95.1 126 51.6
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 5.0e-18 94.7 124 53.2
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.1e-17 93.6 129 55.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.3e-17 91.7 125 55.2
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 4.3e-17 91.7 118 55.9
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 5.6e-17 91.3 130 47.7
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 9.5e-17 90.5 121 52.9
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.2e-16 90.1 124 54.8
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 1.6e-16 89.7 124 54.0
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.6e-16 89.7 124 54.0
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.6e-16 89.7 124 54.8
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.6e-16 89.7 124 55.6
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 2.8e-16 89.0 110 55.5
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 8.1e-16 87.4 122 48.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.4e-15 86.7 100 58.0
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 1.8e-15 86.3 122 47.5
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 2.3e-15 85.9 128 50.8
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 4.0e-15 85.1 119 57.1
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 5.2e-15 84.7 116 51.7
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 5.2e-15 84.7 116 50.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 6.8e-15 84.3 124 49.2
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 2.0e-14 82.8 107 55.1
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 2.6e-14 82.4 113 49.6
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 2.6e-14 82.4 100 57.0
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 4.4e-14 81.6 134 48.5
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 4.4e-14 81.6 118 52.5
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 4.4e-14 81.6 119 48.7
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 5.8e-14 81.3 118 54.2
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 5.8e-14 81.3 118 54.2
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 7.5e-14 80.9 118 54.2
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 7.5e-14 80.9 130 53.1
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 7.5e-14 80.9 99 52.5
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 9.8e-14 80.5 118 53.4
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 9.8e-14 80.5 118 54.2
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 6.4e-13 77.8 118 52.5
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 6.4e-13 77.8 119 48.7
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 8.3e-13 77.4 114 49.1
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-12 77.0 115 53.9
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.1e-12 77.0 115 53.9
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 1.4e-12 76.6 124 50.0
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.4e-12 76.6 100 57.0
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.9e-12 76.3 113 51.3
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.9e-12 76.3 126 46.8
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 2.4e-12 75.9 120 51.7
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 3.2e-12 75.5 126 49.2
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 3.2e-12 75.5 115 50.4
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 4.1e-12 75.1 126 49.2
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 7.1e-12 74.3 118 50.8
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 9.2e-12 73.9 48 83.3
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.2e-11 73.6 55 76.4
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.2e-11 73.6 62 69.4
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 1.2e-11 73.6 72 66.7
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.6e-11 73.2 116 52.6
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 2.1e-11 72.8 117 51.3
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 2.1e-11 72.8 74 62.2
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 4.6e-11 71.6 116 48.3
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 4.6e-11 71.6 58 70.7
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 6.0e-11 71.2 113 52.2
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 6.0e-11 71.2 113 52.2
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 2.3e-10 69.3 122 47.5
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 6.6e-10 67.8 115 47.8
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 6.6e-10 67.8 115 47.8
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.1e-09 67.0 115 47.8
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 2.5e-09 65.9 115 47.0
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 3.3e-09 65.5 127 46.5
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 4.3e-09 65.1 68 63.2
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 3.6e-08 62.0 121 44.6
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 1.1e-07 60.5 121 42.1
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 2.3e-07 59.3 54 68.5
AagrBONN_evm.TU.Sc2ySwM_117.639 Anthoceros agrestis HOM05D006797 ORTHO05D007696 3.1e-07 58.9 134 37.3
Cfa002056 Carpinus fangiana HOM05D006797 ORTHO05D007696 2.6e-06 55.8 156 33.3
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 9.9e-06 53.9 63 61.9


User provided reference genes

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