Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 0.0e+00 1078.5 554 100.0
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.3e-291 1005.7 554 93.1
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 8.4e-278 959.9 579 87.0
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 8.7e-267 923.3 554 85.7
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 5.9e-263 910.6 554 84.5
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.2e-196 690.3 551 66.1
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 9.9e-194 680.6 551 65.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 5.1e-182 641.7 689 53.7
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.5e-181 640.2 547 62.0
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.6e-180 636.7 556 61.5
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.1e-179 634.0 561 61.3
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.7e-175 619.4 558 59.1
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.3e-174 617.1 549 60.7
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.9e-173 613.2 552 59.6
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 4.0e-171 605.5 556 59.5
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 7.9e-167 591.3 553 59.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.0e-166 590.9 547 57.6
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.3e-166 590.5 557 56.9
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 3.9e-166 589.0 557 58.0
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 3.3e-165 585.9 560 58.0
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.3e-165 585.5 550 56.0
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.4e-163 580.5 558 57.9
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.4e-163 579.7 552 58.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.3e-161 573.9 547 56.3
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.7e-161 573.5 546 57.9
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.9e-161 572.8 542 57.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-160 570.9 547 55.4
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 2.5e-160 569.7 547 55.9
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 3.2e-160 569.3 564 54.6
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.7e-159 566.2 547 55.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.5e-159 565.8 533 57.2
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.0e-159 565.1 547 55.4
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.9e-158 562.4 551 55.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 6.7e-158 561.6 545 57.1
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 8.7e-158 561.2 555 54.8
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.3e-155 552.0 548 54.7
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 6.9e-155 551.6 566 54.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.0e-153 547.7 552 55.8
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.7e-153 547.0 553 56.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.2e-153 546.6 553 55.5
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.9e-153 546.2 553 55.9
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 3.8e-153 545.8 557 56.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 8.4e-153 544.7 553 53.5
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.0e-150 537.7 553 53.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 5.1e-150 535.4 542 55.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 6.7e-150 535.0 548 54.9
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 4.3e-149 532.3 553 53.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 8.2e-148 528.1 553 51.7
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 9.0e-147 524.6 542 53.3
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 5.0e-145 518.8 546 51.8
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 6.5e-145 518.5 467 58.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 8.5e-145 518.1 547 52.1
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-144 516.9 551 52.5
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.2e-144 516.2 547 51.9
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.2e-144 515.8 543 54.1
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 7.2e-144 515.0 560 52.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 7.2e-144 515.0 559 51.9
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 9.4e-144 514.6 546 51.8
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.2e-143 514.2 558 51.8
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.6e-143 513.8 543 53.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.6e-143 512.7 520 56.0
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 6.1e-143 511.9 547 51.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 2.3e-142 510.0 557 52.4
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 3.0e-142 509.6 543 53.4
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.3e-141 505.8 543 52.9
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.7e-141 505.4 547 52.8
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.7e-140 503.8 557 51.5
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.2e-140 503.4 545 52.5
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 4.8e-140 502.3 545 51.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 6.3e-140 501.9 544 51.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 6.3e-140 501.9 545 52.3
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.1e-139 501.1 546 50.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 9.1e-139 498.0 544 51.5
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 9.1e-139 498.0 543 52.5
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.5e-138 497.3 546 49.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.4e-138 496.1 544 51.3
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 3.4e-138 496.1 561 49.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.8e-137 492.7 438 60.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.4e-136 490.7 546 49.1
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.2e-136 489.2 480 55.8
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.2e-135 487.6 546 49.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.6e-135 486.1 549 50.3
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.0e-134 484.6 382 63.1
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 6.7e-134 481.9 594 47.8
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.8e-132 475.7 552 50.2
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.4e-131 473.4 528 50.8
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 5.3e-131 472.2 554 48.9
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.2e-128 463.0 550 49.8
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 4.7e-127 459.1 485 52.4
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.3e-125 453.0 554 48.9
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 2.8e-124 449.9 548 47.6
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 2.7e-119 433.3 350 61.1
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.2e-116 423.7 465 51.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-112 410.6 552 47.1
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 2.0e-109 400.6 551 43.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 2.4e-107 393.7 391 57.3
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 6.3e-100 369.0 323 58.5
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.9e-96 357.5 561 41.2
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.2e-91 340.1 352 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 6.0e-90 335.9 511 40.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 8.9e-86 322.0 574 38.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.4e-85 320.1 387 49.9
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 7.8e-82 308.9 511 38.6
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 6.8e-78 295.8 553 35.8
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.4e-77 293.1 281 57.3
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 6.4e-76 289.3 326 52.8
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 9.2e-75 285.4 263 60.8
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 6.2e-71 272.7 217 61.8
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.4e-70 271.6 428 41.1
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.8e-70 269.2 277 54.2
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.4e-69 266.9 397 41.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 4.4e-61 240.0 261 48.3
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 7.6e-61 239.2 277 50.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.4e-59 234.2 517 32.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 4.2e-59 233.4 412 37.6
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.5e-56 224.2 262 51.9
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.6e-56 223.0 166 65.7
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 8.4e-52 209.1 360 39.2
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.8e-49 201.4 158 63.3
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.0e-44 185.7 196 51.5
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 3.8e-44 183.7 155 58.7
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.6e-39 168.3 160 55.6
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.3e-36 158.7 123 65.9
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 3.8e-36 157.1 117 65.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 8.7e-33 146.0 192 44.3
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-32 144.8 143 55.9
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 7.4e-32 142.9 245 43.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.5e-29 135.2 247 41.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.9e-29 133.3 248 41.1
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.6e-21 107.8 95 62.1
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 3.1e-14 84.3 107 47.7
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.9e-11 75.1 199 33.7
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 3.6e-10 70.9 80 47.5
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 3.6e-10 70.9 80 47.5
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 3.7e-07 60.8 148 34.5
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 3.7e-07 60.8 417 23.0
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 6.3e-07 60.1 93 40.9


User provided reference genes

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