Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 4.3e-249 865.1 848 100.0
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 7.4e-225 784.6 848 95.2
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.1e-199 701.0 837 91.9
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 2.6e-169 600.1 850 85.2
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.3e-88 332.0 816 74.4
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 5.9e-81 306.6 720 79.9
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.2e-76 292.4 839 67.5
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 7.5e-76 289.7 714 79.1
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.7e-75 288.5 683 82.3
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.1e-74 285.8 804 73.0
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 7.0e-74 283.1 674 82.0
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 3.8e-72 277.3 753 75.3
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.5e-71 275.4 709 70.1
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.1e-70 271.6 709 79.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 3.0e-69 267.7 852 69.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 3.4e-68 264.2 807 71.9
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 4.4e-68 263.8 812 71.7
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 7.5e-68 263.1 662 81.9
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 4.9e-67 260.4 662 81.9
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.1e-66 259.2 815 70.6
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.4e-66 258.1 462 55.4
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.4e-66 256.9 656 82.6
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.2e-65 255.8 281 64.8
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.6e-65 255.4 666 76.6
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.0e-64 252.7 808 70.4
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.3e-64 252.3 301 71.4
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 2.5e-63 248.1 782 71.4
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.1e-62 245.0 799 70.2
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 4.7e-62 243.8 811 70.3
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 8.0e-62 243.0 690 78.6
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.4e-61 242.3 802 70.8
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 2.3e-61 241.5 734 74.3
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 6.8e-61 240.0 635 83.8
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.8e-61 240.0 811 70.2
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 3.4e-60 237.7 302 65.9
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.3e-59 235.7 799 70.3
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.7e-59 235.3 412 58.0
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.7e-59 235.3 794 70.0
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.4e-58 231.5 795 69.4
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 4.1e-58 230.7 703 76.1
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.6e-57 228.8 740 72.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.0e-56 226.1 700 66.4
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 1.0e-56 226.1 243 49.4
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 5.0e-56 223.8 746 72.0
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.5e-55 222.2 671 78.1
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 3.3e-55 221.1 795 69.9
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 5.6e-55 220.3 759 72.1
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 9.5e-55 219.5 761 71.2
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 9.5e-55 219.5 727 73.6
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.1e-54 218.4 690 77.0
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.8e-54 218.0 193 58.5
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.3e-53 214.9 205 54.6
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.0e-53 214.2 308 44.2
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.0e-53 214.2 238 54.2
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 6.8e-53 213.4 288 46.9
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 5.8e-52 210.3 276 46.7
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 9.9e-52 209.5 196 55.6
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.3e-51 209.1 829 63.1
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.2e-51 208.4 683 72.3
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.2e-51 208.4 849 66.8
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.9e-51 208.0 205 53.2
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 4.9e-51 207.2 791 69.0
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 6.4e-51 206.8 183 58.5
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.1e-50 206.1 703 75.0
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.4e-50 204.9 709 74.9
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 3.2e-50 204.5 197 56.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 3.2e-50 204.5 709 74.6
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 2.1e-49 201.8 787 70.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 2.7e-49 201.4 408 52.7
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 3.5e-49 201.1 206 56.8
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 1.7e-48 198.7 803 67.2
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 3.0e-48 198.0 205 56.6
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 3.9e-48 197.6 329 57.4
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 6.6e-48 196.8 670 73.3
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 2.5e-47 194.9 145 66.2
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 4.3e-47 194.1 203 56.7
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 7.3e-47 193.4 670 73.4
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 9.5e-47 193.0 658 78.3
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.6e-46 191.0 191 54.5
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 5.8e-44 183.7 278 42.8
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 7.6e-44 183.3 794 66.0
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 9.9e-44 183.0 280 63.2
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 3.8e-43 181.0 708 61.6
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 4.9e-43 180.6 323 60.1
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 8.4e-43 179.9 127 68.5
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.1e-42 179.5 202 52.5
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 2.4e-42 178.3 720 70.0
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 2.4e-42 178.3 649 78.3
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.2e-42 177.9 657 61.5
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 9.2e-42 176.4 248 46.4
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.6e-41 175.6 282 43.6
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 2.7e-41 174.9 131 66.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 2.7e-41 174.9 279 61.6
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 4.6e-41 174.1 180 50.0
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 7.8e-41 173.3 183 54.6
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.3e-40 172.6 831 66.9
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.7e-40 172.2 250 45.2
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.7e-40 172.2 250 45.2
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.3e-40 171.8 250 45.2
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 6.6e-40 170.2 233 74.2
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.5e-39 169.1 202 48.0
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.5e-39 168.3 119 68.1
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 5.6e-39 167.2 275 41.8
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.2e-38 166.0 214 47.2
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 2.8e-38 164.9 237 44.7
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.8e-37 162.2 155 55.5
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.9e-37 160.2 390 51.5
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 3.4e-36 157.9 119 64.7
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 5.8e-36 157.1 119 63.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-34 151.8 104 70.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 4.2e-34 151.0 102 70.6
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 4.6e-33 147.5 109 67.0
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 3.9e-32 144.4 103 67.0
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.3e-31 141.0 111 62.2
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 9.0e-29 133.3 111 59.5
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.6e-28 131.7 107 61.7
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.1e-26 126.3 77 77.9
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.9e-26 125.6 109 57.8
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.2e-26 124.4 108 53.7
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.1e-25 122.1 82 69.5
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 3.7e-22 111.3 118 50.0
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 7.6e-20 103.6 82 62.2
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 7.1e-18 97.1 95 50.5
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.2e-17 96.3 58 75.9
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 4.6e-17 94.4 83 56.6
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.0e-12 79.0 50 76.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-12 78.6 59 64.4
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 3.4e-12 78.2 59 64.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.0e-11 76.6 107 43.0
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 5.5e-10 70.9 163 28.2
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.2e-09 69.7 50 66.0
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 2.7e-09 68.6 149 28.9
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 6.0e-09 67.4 138 34.1
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 6.7e-08 63.9 127 26.0
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.1e-07 63.2 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 1.5e-07 62.8 124 27.4
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 3.3e-07 61.6 106 33.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.3e-07 61.6 137 27.7
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 3.3e-07 61.6 175 25.1
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 3.3e-07 61.6 129 27.9
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 4.3e-07 61.2 106 34.0
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 5.7e-07 60.8 140 24.3
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 5.7e-07 60.8 141 25.5
Ciclev10013605m.g Citrus clementina HOM05D006895 ORTHO05D008605 9.7e-07 60.1 130 31.5
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.3e-06 59.7 196 27.6
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 1.6e-06 59.3 116 40.5
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 2.8e-06 58.5 163 28.2
Duzib128G0849 Durio zibethinus HOM05D006895 ORTHO05D008605 2.8e-06 58.5 128 29.7
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 3.7e-06 58.2 128 27.3
Prupe.1G532500 Prunus persica HOM05D006740 ORTHO05D008571 3.7e-06 58.2 124 27.4
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 4.8e-06 57.8 120 30.0
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 6.3e-06 57.4 120 29.2
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 8.2e-06 57.0 165 24.2


User provided reference genes

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