Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.1e-38 161.4 85 100.0
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.9e-35 152.1 85 94.1
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 7.4e-24 113.6 74 82.4
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.1e-22 109.8 80 76.2
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.6e-15 85.9 85 55.3
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.6e-15 85.9 80 60.0
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.8e-15 84.3 77 59.7
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.8e-14 82.4 85 51.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.8e-14 82.4 85 51.8
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.8e-14 82.4 80 56.2
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 3.1e-14 81.6 84 51.2
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.3e-14 80.9 86 55.8
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.3e-14 80.9 80 56.2
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.2e-13 79.7 86 54.7
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.6e-13 78.6 81 55.6
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 4.5e-13 77.8 80 52.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 7.7e-13 77.0 92 47.8
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.7e-12 75.9 82 54.9
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.2e-12 75.5 91 49.5
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.9e-12 75.1 88 54.5
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 2.9e-12 75.1 93 47.3
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 3.8e-12 74.7 82 54.9
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 3.8e-12 74.7 94 47.9
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.8e-12 74.7 81 54.3
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 6.5e-12 73.9 91 46.2
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.5e-12 73.9 80 53.8
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 6.5e-12 73.9 92 44.6
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 8.5e-12 73.6 85 49.4
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 8.5e-12 73.6 93 44.1
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 8.5e-12 73.6 89 48.3
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.1e-11 73.2 85 49.4
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.4e-11 72.8 80 53.8
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.9e-11 72.4 81 50.6
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.9e-11 72.4 81 51.9
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.9e-11 72.4 88 47.7
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 2.5e-11 72.0 79 53.2
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.5e-11 72.0 81 53.1
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.2e-11 71.6 77 53.2
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 5.5e-11 70.9 90 44.4
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.2e-11 70.5 85 48.2
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.2e-11 70.5 85 48.2
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 7.2e-11 70.5 81 51.9
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 9.4e-11 70.1 96 44.8
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 9.4e-11 70.1 85 49.4
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.2e-10 69.7 96 46.9
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.6e-10 69.3 94 45.7
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.6e-10 69.3 85 48.2
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.6e-10 69.3 85 48.2
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.6e-10 69.3 91 44.0
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 2.1e-10 68.9 101 44.6
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.1e-10 68.9 76 52.6
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 2.1e-10 68.9 83 49.4
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.7e-10 68.6 85 47.1
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 2.7e-10 68.6 96 44.8
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 2.7e-10 68.6 83 51.8
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 3.6e-10 68.2 109 41.3
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 3.6e-10 68.2 96 45.8
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 4.6e-10 67.8 67 59.7
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 6.1e-10 67.4 52 61.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 6.1e-10 67.4 98 44.9
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 6.1e-10 67.4 79 49.4
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 7.9e-10 67.0 83 47.0
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.0e-09 66.6 91 45.1
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.0e-09 66.6 64 59.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.0e-09 66.6 96 45.8
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.4e-09 66.2 91 47.3
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 2.3e-09 65.5 55 52.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.3e-09 65.5 79 49.4
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 3.0e-09 65.1 72 52.8
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 3.0e-09 65.1 90 44.4
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 3.0e-09 65.1 89 44.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 3.9e-09 64.7 72 52.8
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.9e-09 64.7 72 52.8
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.9e-09 64.7 72 52.8
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.9e-09 64.7 72 52.8
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 3.9e-09 64.7 39 76.9
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 3.9e-09 64.7 90 42.2
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 5.1e-09 64.3 80 48.8
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 5.1e-09 64.3 39 76.9
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 5.1e-09 64.3 63 57.1
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 5.1e-09 64.3 53 58.5
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 5.1e-09 64.3 53 58.5
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 6.7e-09 63.9 82 47.6
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 6.7e-09 63.9 105 39.0
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 8.8e-09 63.5 48 64.6
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 8.8e-09 63.5 59 57.6
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.8e-09 63.5 81 48.1
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.1e-08 63.2 39 76.9
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.5e-08 62.8 81 48.1
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.5e-08 62.8 53 56.6
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.5e-08 62.8 53 56.6
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.9e-08 62.4 73 49.3
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.9e-08 62.4 67 55.2
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 1.9e-08 62.4 85 44.7
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.5e-08 62.0 90 45.6
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.5e-08 62.0 90 45.6
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.5e-08 62.0 90 45.6
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 3.3e-08 61.6 80 43.8
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 3.3e-08 61.6 80 41.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 4.3e-08 61.2 60 53.3
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.3e-08 61.2 75 50.7
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.7e-08 60.8 96 44.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 7.4e-08 60.5 81 44.4
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 9.7e-08 60.1 85 47.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 1.3e-07 59.7 39 69.2
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.7e-07 59.3 96 42.7
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.2e-07 58.9 85 42.4
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.2e-07 58.9 97 42.3
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-07 57.8 41 65.9
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.8e-07 57.8 102 43.1
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 6.3e-07 57.4 93 39.8
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 6.3e-07 57.4 89 41.6
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.1e-06 56.6 81 44.4
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 2.4e-06 55.5 39 66.7
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.1e-06 55.1 79 44.3
Aqoxy4G00063 Aquilegia oxysepala HOM05D006325 ORTHO05D007878 4.1e-06 54.7 80 42.5
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 5.3e-06 54.3 38 68.4
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 9.1e-06 53.5 68 44.1


User provided reference genes

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