Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 4.3e-169 598.6 479 100.0
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.4e-119 434.1 413 85.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 7.6e-110 401.7 411 83.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.2e-91 341.3 369 79.9
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 2.7e-83 313.5 372 72.8
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.6e-83 313.2 370 77.3
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.7e-83 312.8 367 76.3
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 2.3e-82 310.5 368 74.5
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 5.2e-82 309.3 372 72.8
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.7e-81 305.8 367 76.8
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 5.7e-81 305.8 369 77.2
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 3.7e-80 303.1 388 74.2
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.3e-80 302.4 370 74.1
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 8.2e-80 302.0 369 72.1
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.1e-79 299.7 322 76.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-78 298.1 367 74.7
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.5e-78 296.2 366 74.3
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-78 296.2 366 74.3
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.9e-78 295.8 367 74.7
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.3e-77 294.7 367 74.4
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.8e-77 293.1 369 74.0
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 6.5e-77 292.4 368 74.5
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 8.5e-77 292.0 320 75.9
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 1.5e-76 291.2 372 72.6
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 4.2e-76 289.7 360 72.5
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.2e-75 288.1 370 73.5
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.8e-74 284.3 370 72.2
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.2e-74 282.7 367 70.0
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.8e-74 282.0 322 77.6
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.2e-73 281.6 330 74.8
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.5e-73 281.2 367 71.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 2.0e-73 280.8 360 69.7
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.6e-73 280.4 367 69.2
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.6e-73 280.4 361 69.5
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.6e-73 280.4 359 70.8
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.4e-73 280.0 370 71.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 3.4e-73 280.0 333 73.0
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.4e-73 280.0 370 72.4
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.3e-72 278.1 369 72.4
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.8e-72 276.9 369 69.6
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.7e-72 276.6 368 69.8
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 6.3e-72 275.8 367 71.9
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.3e-72 275.8 370 71.6
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 8.3e-72 275.4 370 70.8
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.1e-71 275.0 369 69.6
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 3.1e-71 273.5 370 71.6
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 9.1e-71 271.9 416 66.3
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 9.1e-71 271.9 370 72.4
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.0e-70 270.8 371 67.7
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.0e-70 270.8 333 74.5
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.5e-70 270.0 371 70.4
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 4.5e-70 269.6 378 67.2
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 5.9e-70 269.2 321 74.1
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.7e-70 268.9 320 76.2
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 7.7e-70 268.9 369 74.0
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.7e-69 267.7 367 70.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.7e-69 267.7 323 75.5
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.7e-69 267.7 322 71.7
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.0e-69 266.2 320 76.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.0e-69 266.2 371 69.8
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.1e-68 265.0 323 75.2
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 2.5e-68 263.8 365 67.7
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 4.2e-68 263.1 368 71.5
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.2e-68 262.3 373 68.4
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 9.4e-68 261.9 327 73.7
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 9.4e-68 261.9 367 66.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.2e-67 261.5 370 68.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.2e-67 261.5 328 74.1
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 3.6e-67 260.0 189 67.7
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 6.1e-67 259.2 329 71.1
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 6.1e-67 259.2 321 73.5
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.0e-66 258.5 320 74.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.0e-66 258.5 368 65.8
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.3e-66 257.3 362 67.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.3e-66 257.3 364 69.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.0e-66 256.9 323 73.1
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 3.0e-66 256.9 367 70.3
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 5.2e-66 256.1 322 76.1
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 6.8e-66 255.8 370 67.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.2e-65 255.0 361 69.0
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.2e-65 255.0 325 70.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.5e-65 254.6 322 75.2
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.0e-65 254.2 363 70.2
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.6e-65 253.8 331 72.8
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 8.3e-64 248.8 328 71.3
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.4e-63 247.3 322 68.6
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.1e-63 246.5 324 71.0
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 9.2e-63 245.4 322 68.6
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.6e-62 244.6 322 73.6
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.5e-62 243.4 363 66.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.9e-62 242.7 323 68.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.0e-61 241.9 323 71.5
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.3e-61 240.7 322 70.2
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.8e-61 240.0 363 65.8
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.1e-60 238.4 322 67.4
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 2.1e-59 234.2 338 66.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 3.6e-59 233.4 384 62.0
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.4e-58 231.5 321 69.2
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-58 231.5 372 67.7
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 8.9e-58 228.8 362 66.0
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 3.4e-57 226.9 317 66.9
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 5.9e-54 216.1 368 63.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.3e-53 214.9 376 59.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 6.6e-53 212.6 320 69.4
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 8.6e-53 212.2 375 66.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.5e-52 211.5 372 63.4
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.5e-52 210.7 373 62.2
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 8.0e-51 205.7 378 64.6
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.0e-49 201.1 375 61.6
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.5e-49 199.1 377 62.1
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.9e-48 196.4 382 57.9
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 8.3e-48 195.7 322 66.8
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.4e-47 194.9 343 63.8
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 7.0e-47 192.6 343 62.7
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.0e-46 191.0 380 58.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.0e-45 188.7 370 41.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.7e-45 188.0 331 65.9
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 5.0e-45 186.4 325 66.8
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.3e-44 183.7 328 64.6
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.3e-44 183.7 331 64.7
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 3.3e-44 183.7 331 65.0
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 4.3e-44 183.3 375 59.2
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 4.3e-44 183.3 375 59.2
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 4.3e-44 183.3 375 59.2
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 5.6e-44 183.0 372 59.7
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 5.6e-44 183.0 372 59.7
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 2.3e-42 177.6 333 64.0
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 9.8e-41 172.2 127 70.1
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 4.9e-40 169.9 313 60.1
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.9e-39 167.9 321 63.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.1e-38 164.5 331 62.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 3.5e-38 163.7 170 52.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.1e-36 158.7 328 62.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.9e-36 157.9 326 61.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.9e-36 157.9 328 62.5
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.9e-36 157.9 328 62.5
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.6e-35 154.8 319 62.4
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.7e-35 153.3 198 46.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 6.2e-35 152.9 322 62.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.1e-34 152.1 371 40.2
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.4e-34 151.8 192 45.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.3e-32 145.2 322 52.8
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.7e-32 144.8 313 66.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.4e-31 141.0 349 53.3
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.0e-29 135.6 312 61.5
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.3e-29 135.2 337 59.3
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 3.0e-29 134.0 268 70.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.3e-28 129.4 203 39.9
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.6e-28 129.0 199 39.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 3.6e-27 127.1 336 58.6
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.1e-26 125.6 340 58.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.2e-25 122.1 339 53.4
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.8e-24 117.1 212 74.1
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 9.3e-23 112.5 326 54.0
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.2e-16 91.3 169 87.6
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 4.9e-16 90.1 229 67.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 4.9e-16 90.1 120 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.1e-15 89.0 194 31.4
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.5e-12 77.8 85 51.8
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.6e-11 75.1 178 37.1
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.8e-10 71.6 90 62.2
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.4e-10 71.2 183 28.4
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 5.3e-10 70.1 39 79.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.3e-10 70.1 87 46.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.3e-08 65.5 39 74.4
MD15G1359100 Malus domestica HOM05D004193 ORTHO05D004862 4.2e-07 60.5 31 87.1
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.6e-06 58.5 87 43.7
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 1.6e-06 58.5 39 69.2
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.5e-06 57.4 39 66.7
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 6.0e-06 56.6 39 66.7


User provided reference genes

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