Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 7.6e-75 283.9 156 100.0
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 3.3e-70 268.5 156 95.5
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.2e-67 260.0 156 92.3
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 7.6e-59 230.7 157 86.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 4.6e-48 194.9 159 72.3
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.3e-45 186.8 155 71.0
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 2.8e-45 185.7 164 70.7
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-44 183.3 157 72.6
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 4.0e-44 181.8 157 72.0
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.9e-44 181.0 157 71.3
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 7.6e-43 177.6 158 71.5
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 1.0e-42 177.2 163 68.7
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.7e-42 176.4 157 69.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 4.9e-42 174.9 156 70.5
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 4.9e-42 174.9 159 69.8
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.1e-41 173.7 154 68.8
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.5e-41 171.4 158 69.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.5e-41 171.4 156 69.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 9.3e-41 170.6 157 69.4
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 1.2e-40 170.2 158 69.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.2e-40 170.2 158 69.0
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-40 170.2 157 69.4
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 4.6e-40 168.3 156 67.3
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.0e-39 167.2 158 68.4
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.8e-39 166.4 159 69.2
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.3e-39 166.0 158 64.6
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.0e-39 165.6 155 69.7
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 3.0e-39 165.6 156 68.6
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 6.7e-39 164.5 155 68.4
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.1e-38 163.7 165 64.2
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.1e-38 163.7 114 81.6
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.9e-38 162.9 158 66.5
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 1.9e-38 162.9 157 68.8
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.5e-38 162.5 155 67.1
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 4.3e-38 161.8 164 64.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.7e-37 158.7 155 69.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.4e-36 156.0 169 62.7
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 3.1e-36 155.6 143 72.7
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.1e-36 155.6 141 68.1
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.1e-36 155.2 192 55.7
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 1.5e-35 153.3 155 67.1
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.0e-35 152.9 140 65.7
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.0e-35 152.9 140 65.7
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 4.5e-35 151.8 156 65.4
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.8e-34 148.7 159 62.3
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 3.8e-34 148.7 160 64.4
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 3.8e-34 148.7 160 64.4
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.0e-34 148.3 148 64.9
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 6.5e-34 147.9 154 64.9
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 6.5e-34 147.9 157 66.9
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 6.5e-34 147.9 157 66.9
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 6.5e-34 147.9 139 66.9
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 8.5e-34 147.5 156 67.3
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 8.5e-34 147.5 156 66.7
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-33 146.7 157 66.9
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.2e-33 145.6 145 64.8
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 4.2e-33 145.2 162 62.3
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 4.2e-33 145.2 153 61.4
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 5.5e-33 144.8 160 62.5
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 9.4e-33 144.1 157 66.2
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 9.4e-33 144.1 162 63.0
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.4e-33 144.1 162 61.7
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 9.4e-33 144.1 153 60.1
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 9.4e-33 144.1 160 61.9
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.6e-32 143.3 139 64.7
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.7e-32 142.5 152 66.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 2.7e-32 142.5 153 64.7
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-32 142.5 157 61.1
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 3.6e-32 142.1 157 65.0
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 6.1e-32 141.4 137 63.5
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 7.9e-32 141.0 153 64.7
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.0e-31 140.6 148 66.2
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.0e-31 140.6 154 63.0
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 1.0e-31 140.6 156 60.3
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 1.4e-31 140.2 146 65.8
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-31 140.2 156 64.7
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.4e-31 140.2 156 64.7
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.4e-31 140.2 138 68.8
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.8e-31 139.8 156 65.4
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.3e-31 139.4 136 66.9
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 3.0e-31 139.0 157 61.1
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 5.1e-31 138.3 164 62.2
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 2.5e-30 136.0 147 61.2
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 3.3e-30 135.6 144 63.2
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 4.3e-30 135.2 145 66.2
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 4.3e-30 135.2 151 61.6
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 5.7e-30 134.8 159 62.9
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 5.7e-30 134.8 159 62.9
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 5.7e-30 134.8 159 62.9
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 7.4e-30 134.4 133 66.2
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 7.4e-30 134.4 143 65.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 8.2e-29 131.0 137 64.2
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.8e-28 129.8 153 61.4
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.8e-28 129.8 163 60.1
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.1e-28 129.0 133 63.2
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 5.3e-28 128.3 162 61.1
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 6.9e-28 127.9 129 66.7
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.2e-27 127.1 162 61.1
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.3e-26 123.6 155 56.8
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 5.0e-26 121.7 79 83.5
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 1.1e-25 120.6 141 59.6
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.2e-24 117.1 150 58.0
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.2e-24 117.1 135 60.0
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.2e-24 117.1 157 55.4
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.7e-24 115.9 86 75.6
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 7.9e-24 114.4 140 57.1
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.3e-23 112.8 166 52.4
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.1e-23 111.7 89 73.0
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.1e-23 111.7 89 73.0
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 8.8e-23 110.9 89 75.3
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.5e-22 110.2 161 54.0
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.6e-22 109.4 98 68.4
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 3.3e-22 109.0 108 64.8
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 5.7e-22 108.2 162 53.7
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 7.4e-22 107.8 95 67.4
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 7.4e-22 107.8 77 77.9
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 9.7e-22 107.5 80 73.8
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 6.3e-21 104.8 66 84.8
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 7.0e-20 101.3 171 45.0
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.0e-18 97.4 118 59.3
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 7.4e-14 81.3 59 78.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.2e-11 73.9 129 52.7
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 2.6e-11 72.8 105 50.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 4.5e-11 72.0 116 54.3
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.7e-10 70.1 147 44.9
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 2.9e-10 69.3 130 48.5
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.5e-09 66.2 83 56.6
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 5.2e-07 58.5 46 71.7


User provided reference genes

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