Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 2.9e-249 864.8 432 100.0
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 7.6e-226 786.9 418 92.3
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 8.5e-201 703.7 458 77.5
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 3.3e-189 665.2 415 79.3
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.1e-129 465.3 432 56.2
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 6.2e-127 458.4 429 55.5
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 6.9e-126 454.9 418 55.5
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 1.2e-125 454.1 418 56.2
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 5.8e-125 451.8 418 55.7
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 3.8e-124 449.1 418 55.3
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.1e-123 447.6 421 54.6
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 1.7e-121 440.3 419 55.1
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 3.0e-121 439.5 422 54.0
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 3.9e-121 439.1 420 53.1
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 2.5e-120 436.4 420 55.2
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 2.5e-120 436.4 417 53.7
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 9.6e-120 434.5 417 54.7
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 2.8e-119 433.0 419 54.2
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 4.8e-119 432.2 419 52.3
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 1.5e-117 427.2 439 51.3
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 2.6e-117 426.4 419 52.5
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 9.9e-117 424.5 419 52.0
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 6.4e-116 421.8 419 53.2
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 7.1e-115 418.3 419 51.3
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 6.0e-114 415.2 419 52.7
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 1.8e-113 413.7 419 53.5
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 8.7e-113 411.4 420 51.0
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 8.7e-113 411.4 415 52.0
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 8.7e-113 411.4 417 51.1
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 5.6e-112 408.7 417 51.1
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 2.8e-111 406.4 417 50.8
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 1.1e-110 404.4 417 49.9
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 1.5e-109 400.6 413 52.8
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 6.5e-108 395.2 423 49.4
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 1.2e-106 391.0 431 47.8
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 2.1e-106 390.2 419 49.4
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 4.6e-106 389.0 420 48.3
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 4.6e-106 389.0 417 49.2
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 6.0e-106 388.7 419 49.4
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.8e-105 387.1 418 49.3
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 5.1e-105 385.6 418 50.0
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 8.7e-105 384.8 417 47.0
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 3.3e-104 382.9 421 47.7
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 3.3e-104 382.9 418 50.0
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 9.6e-104 381.3 419 48.0
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 9.6e-104 381.3 419 50.8
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 1.6e-103 380.6 383 52.0
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 2.1e-103 380.2 432 46.8
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 4.8e-103 379.0 421 48.0
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 4.8e-103 379.0 421 47.3
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 6.2e-103 378.6 418 47.4
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 6.2e-103 378.6 423 48.0
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 8.2e-103 378.3 416 48.8
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 8.2e-103 378.3 421 47.3
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 2.4e-102 376.7 415 47.7
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 2.4e-102 376.7 433 48.3
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 9.0e-102 374.8 417 47.0
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.5e-101 374.0 490 43.5
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.5e-101 374.0 438 46.6
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.5e-101 374.0 452 47.6
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 2.0e-101 373.6 416 47.6
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 2.6e-101 373.2 416 47.6
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 3.4e-101 372.9 420 49.3
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.0e-100 371.3 419 46.3
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 1.0e-100 371.3 419 46.8
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 6.5e-100 368.6 419 45.8
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.1e-99 367.9 423 45.2
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 7.1e-99 365.2 423 48.0
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.0e-97 361.3 422 46.2
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 5.1e-97 359.0 419 43.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 3.3e-96 356.3 417 45.8
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 2.2e-95 353.6 418 45.5
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.8e-94 350.5 418 48.6
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 2.4e-94 350.1 422 44.1
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 5.9e-93 345.5 345 52.2
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 5.0e-92 342.4 418 42.1
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 6.5e-92 342.0 506 39.7
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.1e-91 341.3 418 43.1
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 4.6e-90 335.9 507 39.4
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 5.3e-86 322.4 344 48.8
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.5e-85 320.9 442 40.0
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 8.5e-84 315.1 426 38.7
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 8.5e-84 315.1 337 49.3
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 7.2e-83 312.0 455 40.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 4.2e-75 286.2 419 38.2
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 2.1e-74 283.9 447 38.0
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 3.9e-73 279.6 437 36.4
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.0e-69 267.3 370 40.3
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 2.9e-68 263.5 441 37.9
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 6.8e-65 252.3 282 46.8
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 2.6e-64 250.4 408 37.5
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.7e-64 249.2 266 51.9
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 6.3e-63 245.7 435 36.8
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 5.0e-60 236.1 428 35.5
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 5.5e-59 232.6 239 49.8
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.6e-58 231.1 270 44.4
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 3.7e-55 219.9 274 44.2
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 7.0e-54 215.7 203 53.2
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 1.3e-52 211.5 269 43.5
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 5.5e-51 206.1 257 44.4
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.7e-48 196.1 203 49.8
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 3.7e-47 193.4 210 48.6
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 7.8e-45 185.7 197 49.2
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 6.8e-41 172.6 436 26.8
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.8e-40 169.5 145 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 2.6e-32 144.1 366 30.6
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.4e-32 143.7 167 43.7
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.3e-31 141.7 303 32.7
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 2.4e-30 137.5 220 36.4
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 9.5e-27 125.6 157 42.0
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.8e-26 124.0 140 44.3
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.9e-14 84.7 165 40.6
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 3.0e-12 77.4 167 32.9
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 2.8e-10 70.9 47 68.1
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.8e-07 60.5 59 52.5
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 3.8e-07 60.5 64 51.6
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.8e-07 60.5 64 51.6


User provided reference genes

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