Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.5e-145 518.8 276 100.0
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.4e-132 476.5 276 92.0
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.9e-111 404.1 281 80.4
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.9e-111 404.1 281 80.4
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 3.2e-52 209.5 295 50.2
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 7.0e-31 138.7 297 39.1
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 8.5e-29 131.7 297 40.7
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.6e-27 126.3 271 37.6
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 4.7e-27 125.9 326 36.5
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 5.2e-26 122.5 300 38.7
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.7e-26 122.1 320 37.8
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 8.8e-26 121.7 253 40.3
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.5e-25 120.9 331 36.6
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.4e-25 119.4 321 37.7
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.4e-25 119.4 311 37.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 5.7e-25 119.0 289 37.4
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.4e-25 118.6 281 40.2
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 7.4e-25 118.6 295 40.0
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.3e-24 117.9 294 40.1
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.3e-24 117.9 284 37.7
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.7e-24 117.5 287 39.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.2e-24 117.1 307 36.8
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 2.8e-24 116.7 283 38.9
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-23 114.8 294 39.8
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.4e-23 113.6 322 37.3
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.6e-22 110.9 322 37.9
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.0e-22 110.5 325 34.2
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 2.0e-22 110.5 293 38.9
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 2.6e-22 110.2 318 35.2
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 4.5e-22 109.4 276 39.1
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 5.9e-22 109.0 292 36.3
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.7e-21 107.5 301 38.2
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 3.8e-21 106.3 292 36.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.0e-21 105.9 292 36.3
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-20 104.8 299 38.1
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.2e-20 103.2 290 34.8
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 3.2e-20 103.2 294 38.1
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 4.2e-20 102.8 293 37.9
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 5.5e-20 102.4 292 37.3
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-20 101.7 296 36.5
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-20 101.7 296 36.5
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.6e-19 100.9 301 37.9
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 2.1e-19 100.5 315 35.9
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 4.7e-19 99.4 328 36.6
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 6.1e-19 99.0 338 35.2
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.0e-18 98.2 285 34.7
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-18 98.2 242 37.6
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.4e-18 97.8 322 33.9
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 6.7e-18 95.5 201 40.3
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 1.5e-17 94.4 307 36.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.0e-17 94.0 313 35.1
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.7e-17 91.7 217 37.8
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.7e-16 90.9 287 34.1
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.7e-16 90.9 331 34.1
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 2.8e-16 90.1 291 35.7
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 4.8e-16 89.4 320 33.4
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 4.8e-16 89.4 305 35.4
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.1e-15 88.2 332 33.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 3.1e-15 86.7 306 35.0
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 4.1e-15 86.3 312 34.3
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 5.3e-15 85.9 326 33.7
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 9.1e-15 85.1 326 32.5
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 2.0e-14 84.0 279 32.6
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 3.5e-14 83.2 313 32.9
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.5e-14 82.8 327 33.6
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 5.9e-14 82.4 292 35.6
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 7.7e-14 82.0 303 33.0
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.3e-13 81.3 309 30.7
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 1.3e-13 81.3 282 34.8
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 1.3e-13 81.3 324 33.0
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-13 81.3 290 36.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-13 81.3 290 36.6
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 1.7e-13 80.9 281 32.7
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 2.2e-13 80.5 311 33.8
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.2e-13 80.5 315 35.2
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 5.0e-13 79.3 282 34.0
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 6.5e-13 79.0 282 32.6
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.1e-12 78.2 317 32.8
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.2e-12 76.3 297 34.7
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 7.2e-12 75.5 301 34.2
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 9.4e-12 75.1 324 30.2
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.2e-11 74.7 289 33.9
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 2.1e-11 73.9 291 33.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.7e-11 73.6 308 34.1
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 3.6e-11 73.2 327 31.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.7e-11 72.8 253 33.2
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.7e-11 72.8 298 34.9
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 1.0e-10 71.6 260 36.9
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.0e-10 71.6 315 34.0
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.4e-10 71.2 316 32.0
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.0e-10 70.1 301 32.9
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 5.2e-10 69.3 286 33.6
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 5.2e-10 69.3 312 31.4
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 5.2e-10 69.3 254 34.3
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-09 68.2 285 31.2
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.2e-09 68.2 288 31.6
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 1.5e-09 67.8 280 31.1
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.5e-09 67.8 286 33.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.5e-09 67.8 286 33.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.5e-09 67.8 286 33.2
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.5e-09 67.8 331 30.5
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.0e-09 67.4 287 35.2
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.0e-09 67.4 287 35.2
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.0e-09 67.4 287 35.2
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.6e-09 67.0 297 30.3
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 4.4e-09 66.2 281 32.7
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 5.7e-09 65.9 355 30.7
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.7e-09 65.9 286 31.5
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 7.5e-09 65.5 265 30.6
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 7.5e-09 65.5 299 30.8
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.3e-08 64.7 285 30.5
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.3e-08 64.7 286 34.6
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.3e-08 64.7 286 34.6
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 1.7e-08 64.3 283 30.7
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 2.2e-08 63.9 315 28.3
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 2.8e-08 63.5 296 32.1
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 3.7e-08 63.2 293 32.1
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 4.8e-08 62.8 285 32.6
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 4.8e-08 62.8 294 29.9
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 8.3e-08 62.0 222 31.5
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.1e-07 61.6 290 33.4
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 1.1e-07 61.6 285 31.9
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.8e-07 60.8 251 33.1
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.8e-07 60.8 300 30.0
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 3.1e-07 60.1 261 31.0
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.1e-07 60.1 281 31.0
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 4.1e-07 59.7 288 31.2
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 5.4e-07 59.3 312 30.8
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 7.0e-07 58.9 296 29.1
Zm00001eb151490 Zea mays HOM05D021283 ORTHO05D037081 2.7e-06 57.0 323 29.7
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 3.5e-06 56.6 282 28.7
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 3.5e-06 56.6 253 32.4
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 4.5e-06 56.2 288 30.6
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 5.9e-06 55.8 281 31.7
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 7.7e-06 55.5 296 30.1


User provided reference genes

Program Settings