Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 2.4e-50 201.8 99 100.0
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.2e-33 146.4 93 77.4
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.2e-33 146.4 93 77.4
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 7.0e-26 120.6 97 67.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-20 103.2 97 55.7
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.5e-20 100.5 58 72.4
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.5e-20 100.5 58 72.4
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.7e-19 99.4 98 54.1
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.5e-15 85.5 83 48.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 3.3e-15 85.1 92 50.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-15 84.7 100 48.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.3e-15 84.7 80 43.8
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-15 84.3 106 42.5
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-15 84.3 106 42.5
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 7.3e-15 84.0 97 43.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-14 82.8 88 40.9
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-14 82.4 81 51.9
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-14 81.3 50 62.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.2e-14 80.9 53 66.0
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-13 80.1 91 44.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-13 79.7 60 51.7
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-13 79.3 92 41.3
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-13 79.3 97 42.3
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.8e-13 79.3 80 46.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.3e-13 79.0 53 60.4
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.1e-13 78.6 97 42.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 4.0e-13 78.2 74 41.9
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 4.0e-13 78.2 78 43.6
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.2e-13 77.8 91 42.9
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-13 77.8 93 41.9
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.2e-13 77.8 92 44.6
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.2e-13 77.8 73 42.5
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.8e-13 77.4 79 45.6
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.8e-13 77.4 90 42.2
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 6.8e-13 77.4 50 56.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 8.9e-13 77.0 80 47.5
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 8.9e-13 77.0 91 45.1
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 8.9e-13 77.0 91 45.1
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 8.9e-13 77.0 92 43.5
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 8.9e-13 77.0 91 42.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.9e-13 77.0 91 42.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 8.9e-13 77.0 78 44.9
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.2e-12 76.6 90 41.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.2e-12 76.6 79 43.0
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.2e-12 76.6 94 40.4
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.5e-12 76.3 85 42.4
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-12 76.3 47 61.7
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.5e-12 76.3 48 60.4
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.5e-12 76.3 89 41.6
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.6e-12 75.5 92 41.3
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.6e-12 75.5 91 44.0
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.6e-12 75.5 78 44.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 3.4e-12 75.1 99 40.4
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.4e-12 74.7 50 54.0
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.4e-12 74.7 78 44.9
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.8e-12 74.3 83 43.4
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 5.8e-12 74.3 52 51.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 5.8e-12 74.3 52 51.9
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 7.5e-12 73.9 50 56.0
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.5e-12 73.9 96 39.6
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 9.9e-12 73.6 96 39.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-11 73.2 101 36.6
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-11 73.2 87 41.4
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-11 73.2 87 39.1
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.3e-11 73.2 95 40.0
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-11 73.2 91 39.6
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.3e-11 73.2 96 41.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.7e-11 72.8 80 42.5
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.2e-11 72.4 47 55.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-11 72.4 90 41.1
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.2e-11 72.4 83 42.2
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-11 72.0 82 43.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.9e-11 72.0 83 42.2
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.9e-11 72.0 83 42.2
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.9e-11 72.0 86 40.7
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.9e-11 72.0 92 39.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 3.7e-11 71.6 92 40.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-11 71.6 52 51.9
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 3.7e-11 71.6 72 44.4
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.7e-11 71.6 93 37.6
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.7e-11 71.6 79 46.8
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.9e-11 71.2 92 40.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 4.9e-11 71.2 47 57.4
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-11 71.2 92 37.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.9e-11 71.2 48 56.2
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.4e-11 70.9 100 40.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-11 70.9 51 51.0
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-11 70.9 77 39.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 8.3e-11 70.5 52 53.8
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-11 70.5 92 40.2
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-11 70.5 92 40.2
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 8.3e-11 70.5 96 40.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-10 70.1 78 42.3
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.1e-10 70.1 82 40.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.1e-10 70.1 92 42.4
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-10 70.1 91 37.4
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-10 69.7 48 56.2
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-10 69.7 51 52.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-10 69.7 86 38.4
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-10 69.3 85 41.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-10 69.3 85 41.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.9e-10 69.3 51 51.0
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-10 69.3 78 43.6
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-10 69.3 58 46.6
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-10 69.3 58 46.6
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.4e-10 68.9 81 42.0
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.2e-10 68.6 58 44.8
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 3.2e-10 68.6 48 52.1
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 3.2e-10 68.6 81 42.0
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.2e-10 68.6 48 54.2
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.1e-10 68.2 96 36.5
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.1e-10 68.2 85 40.0
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 4.1e-10 68.2 48 52.1
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.4e-10 67.8 53 47.2
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.1e-10 67.4 55 47.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 79 39.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 81 39.5
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 79 39.2
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 7.1e-10 67.4 88 38.6
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 7.1e-10 67.4 90 42.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.2e-10 67.0 86 40.7
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 9.2e-10 67.0 73 38.4
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 9.2e-10 67.0 99 37.4
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.2e-09 66.6 84 40.5
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-09 66.6 92 38.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.2e-09 66.6 92 39.1
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.6e-09 66.2 84 39.3
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.6e-09 66.2 89 38.2
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.1e-09 65.9 91 34.1
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.1e-09 65.9 57 47.4
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.7e-09 65.5 85 38.8
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 2.7e-09 65.5 81 40.7
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-09 65.5 79 38.0
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.5e-09 65.1 92 39.1
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.5e-09 65.1 93 40.9
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.6e-09 64.7 85 36.5
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-09 64.7 50 48.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-09 64.3 74 40.5
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.0e-08 63.5 93 36.6
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-08 63.5 93 34.4
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-08 63.2 87 36.8
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.7e-08 62.8 81 37.0
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.0e-08 62.0 58 41.4
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.9e-08 61.6 89 34.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.9e-08 61.6 46 47.8
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 3.9e-08 61.6 73 38.4
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.9e-08 61.6 91 30.8
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.1e-08 61.2 75 37.3
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 6.6e-08 60.8 68 38.2
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 8.6e-08 60.5 87 33.3
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.6e-08 60.5 51 43.1
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-07 60.1 92 34.8
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 87 32.2
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-07 59.7 92 33.7
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-07 59.7 95 36.8
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-07 59.7 90 33.3
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-07 59.3 89 37.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-07 59.3 77 39.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-07 58.9 75 38.7
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-07 58.9 95 31.6
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.5e-07 58.9 46 43.5
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.5e-07 58.9 95 35.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-07 58.2 91 34.1
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-07 58.2 77 36.4
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-07 58.2 77 36.4
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-07 57.8 77 36.4
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-07 57.8 89 37.1
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 7.3e-07 57.4 80 41.2
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.3e-07 57.4 90 32.2
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.3e-07 57.4 80 41.2
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.3e-07 57.4 40 50.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 7.3e-07 57.4 87 35.6
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-07 57.0 80 36.2
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-07 57.0 80 36.2
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.2e-06 56.6 60 40.0
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-06 56.2 49 44.9
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-06 55.8 80 37.5
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-06 55.8 48 41.7
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.6e-06 55.1 42 47.6
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 6.2e-06 54.3 79 39.2
Nitab4.5_0005244g0100 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.2e-06 54.3 64 39.1


User provided reference genes

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