Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.6e-46 189.1 96 100.0
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-29 132.5 95 67.4
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-29 132.5 95 67.4
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.5e-25 119.4 97 67.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.3e-21 106.3 58 79.3
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.3e-21 106.3 58 79.3
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-20 102.8 97 58.8
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.6e-19 99.4 97 56.7
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 96 45.8
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.4e-15 86.3 94 47.9
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-15 85.1 55 63.6
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-15 85.1 55 63.6
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 3.2e-15 85.1 89 49.4
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.7e-14 82.0 95 44.2
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 46.8
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 55 65.5
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 50 66.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-14 81.3 94 42.6
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.6e-14 81.3 100 48.0
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.6e-14 81.3 103 46.6
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.6e-14 81.3 100 48.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 4.6e-14 81.3 92 50.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-14 80.9 100 47.0
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.8e-14 80.5 95 44.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 7.8e-14 80.5 55 61.8
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.0e-13 80.1 103 45.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.0e-13 80.1 97 43.3
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 103 45.6
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.7e-13 79.3 92 45.7
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.7e-13 79.3 92 39.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.7e-13 79.3 93 44.1
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 2.3e-13 79.0 99 43.4
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 2.3e-13 79.0 48 70.8
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-13 78.6 80 47.5
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.0e-13 78.6 80 47.5
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.0e-13 78.6 97 48.5
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.0e-13 78.6 96 43.8
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 5.1e-13 77.8 97 42.3
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 5.1e-13 77.8 94 43.6
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 91 42.9
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 82 46.3
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.1e-13 77.8 81 45.7
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 6.6e-13 77.4 95 45.3
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 8.6e-13 77.0 84 50.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.6e-13 77.0 103 40.8
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 48 66.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.5e-12 76.3 49 61.2
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-12 75.9 48 66.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 47 59.6
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 84 50.0
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 84 50.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-12 75.5 93 45.2
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.5e-12 75.5 48 60.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.3e-12 75.1 84 42.9
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.3e-12 74.7 47 61.7
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 89 43.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.3e-12 74.7 86 45.3
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 48 64.6
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 5.6e-12 74.3 51 56.9
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 5.6e-12 74.3 91 41.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.6e-12 74.3 60 48.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.6e-12 73.6 48 60.4
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 9.6e-12 73.6 88 47.7
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 86 40.7
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.2e-11 73.2 94 46.8
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-11 72.8 47 59.6
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.6e-11 72.8 97 45.4
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.8e-11 72.0 47 63.8
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.8e-11 72.0 47 61.7
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 3.6e-11 71.6 48 56.2
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 3.6e-11 71.6 50 54.0
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.6e-11 71.6 89 38.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 3.6e-11 71.6 55 60.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-11 71.2 91 39.6
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-11 71.2 91 39.6
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-11 71.2 88 38.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 6.2e-11 70.9 48 56.2
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.1e-11 70.5 82 45.1
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 8.1e-11 70.5 48 56.2
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.1e-10 70.1 50 52.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.4e-10 69.7 91 42.9
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.8e-10 69.3 47 57.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.8e-10 69.3 53 52.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-10 68.9 69 44.9
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.4e-10 68.9 63 46.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.4e-10 68.9 95 38.9
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 3.1e-10 68.6 47 57.4
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 3.1e-10 68.6 47 57.4
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.1e-10 68.6 96 36.5
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 3.1e-10 68.6 88 38.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.0e-10 68.2 94 40.4
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.2e-10 67.8 93 41.9
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.2e-10 67.8 93 41.9
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 5.2e-10 67.8 94 40.4
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-10 67.8 91 39.6
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-10 67.8 94 40.4
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-10 67.8 49 53.1
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.8e-10 67.4 80 45.0
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 6.8e-10 67.4 49 55.1
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.9e-10 67.0 94 40.4
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-10 67.0 53 49.1
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-09 66.6 93 33.3
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-09 66.6 88 40.9
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.5e-09 66.2 47 53.2
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.5e-09 66.2 94 41.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.5e-09 66.2 88 38.6
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.5e-09 66.2 90 43.3
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-09 66.2 88 40.9
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-09 66.2 93 39.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.5e-09 66.2 60 46.7
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.0e-09 65.9 93 40.9
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-09 65.9 92 39.1
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 47 59.6
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 52.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 52.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 49 51.0
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.6e-09 65.5 50 50.0
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.6e-09 65.5 92 46.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-09 65.1 92 40.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-09 65.1 75 37.3
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 4.4e-09 64.7 51 49.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-09 64.7 89 37.1
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-09 64.7 89 37.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 5.8e-09 64.3 91 36.3
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.6e-09 63.9 52 48.1
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.6e-09 63.9 88 36.4
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 7.6e-09 63.9 82 37.8
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.6e-09 63.9 94 42.6
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.6e-09 63.9 90 37.8
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.6e-09 63.9 51 47.1
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.9e-09 63.5 87 39.1
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-09 63.5 48 50.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-09 63.5 48 50.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-09 63.5 48 50.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 9.9e-09 63.5 89 37.1
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 94 31.9
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-08 63.2 91 35.2
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 89 36.0
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 80 36.2
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-08 62.8 48 54.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-08 62.4 50 52.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.2e-08 62.4 48 52.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-08 62.4 64 40.6
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 57 42.1
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.9e-08 62.0 48 50.0
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.8e-08 61.6 85 38.8
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.9e-08 61.2 48 50.0
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-08 61.2 51 49.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 6.4e-08 60.8 90 37.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.4e-08 60.8 87 35.6
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 6.4e-08 60.8 85 40.0
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.4e-08 60.8 46 50.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 6.4e-08 60.8 46 50.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 6.4e-08 60.8 46 50.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 6.4e-08 60.8 87 36.8
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 8.4e-08 60.5 92 35.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 8.4e-08 60.5 48 50.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-07 60.1 57 40.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-07 60.1 57 40.4
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.4e-07 59.7 86 33.7
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.9e-07 59.3 57 40.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-07 59.3 49 44.9
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.9e-07 59.3 96 37.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.4e-07 58.9 96 34.4
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 3.2e-07 58.5 87 36.8
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-07 57.8 93 35.5
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 5.4e-07 57.8 90 40.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 9.3e-07 57.0 90 40.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-06 55.8 93 34.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-06 55.8 52 42.3
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.7e-06 55.5 48 45.8
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.7e-06 55.5 52 42.3
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-06 55.1 93 33.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-06 54.7 42 47.6
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 6.0e-06 54.3 90 36.7
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.8e-06 53.9 60 40.0


User provided reference genes

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