Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 4.4e-192 674.5 345 100.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.9e-187 659.1 345 97.7
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.1e-177 626.7 347 93.1
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 5.5e-142 508.1 344 72.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.5e-139 500.0 343 71.7
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 5.6e-139 498.0 334 73.4
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 4.0e-137 491.9 335 72.8
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 9.0e-137 490.7 335 73.1
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.8e-135 485.3 337 70.3
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.6e-133 479.9 337 71.8
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 3.5e-133 478.8 338 71.3
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 3.5e-133 478.8 331 71.9
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 6.0e-133 478.0 335 71.9
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 3.0e-132 475.7 338 69.8
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.1e-132 474.9 335 70.1
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 5.1e-132 474.9 335 71.6
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.5e-131 473.4 340 67.1
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.9e-131 473.0 318 73.3
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.3e-131 471.9 338 71.0
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.7e-131 471.5 345 67.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.8e-130 469.2 336 69.3
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.8e-130 469.2 318 72.3
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.8e-130 468.4 337 70.3
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.4e-129 466.8 338 68.3
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 2.4e-129 466.1 351 67.2
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 4.1e-129 465.3 338 68.3
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.2e-128 463.8 344 66.0
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.5e-128 463.4 338 68.9
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 5.9e-128 461.5 345 69.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 5.9e-128 461.5 318 72.0
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.9e-128 461.5 343 66.5
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.2e-127 459.5 314 71.0
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.2e-127 459.5 338 67.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 3.8e-127 458.8 341 67.7
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.8e-127 458.8 338 67.8
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.0e-127 458.4 335 67.8
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.2e-126 455.7 318 73.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.2e-126 455.3 331 70.1
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 9.3e-126 454.1 346 65.3
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.2e-125 453.8 316 70.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.6e-125 451.8 314 70.7
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.6e-125 451.8 343 67.6
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.0e-124 450.7 314 70.1
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.8e-124 449.9 343 67.1
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.8e-124 449.9 342 68.1
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.3e-124 449.5 336 67.6
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.3e-124 449.5 339 67.0
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 2.3e-124 449.5 342 66.1
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.3e-124 449.5 338 66.0
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.0e-124 449.1 315 70.5
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.0e-124 449.1 315 70.5
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.0e-124 449.1 315 70.5
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.0e-124 449.1 338 67.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 8.7e-124 447.6 322 69.6
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-123 447.2 342 67.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.5e-123 446.0 328 68.0
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.3e-123 445.3 345 66.4
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.3e-123 445.3 345 66.4
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 7.4e-123 444.5 342 66.4
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 9.7e-123 444.1 345 66.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 9.7e-123 444.1 345 66.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.3e-122 443.7 345 66.4
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.6e-122 443.4 340 66.5
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.8e-122 442.6 343 65.3
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 4.8e-122 441.8 344 65.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-121 440.7 352 66.2
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-121 440.7 352 66.2
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 4.1e-121 438.7 346 64.5
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.2e-120 437.2 339 63.7
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.2e-120 437.2 316 71.2
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.2e-120 437.2 344 64.8
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.0e-120 436.4 337 65.6
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.6e-120 436.0 338 64.5
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.0e-119 434.1 334 65.3
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 2.9e-119 432.6 335 66.0
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.5e-118 429.5 342 65.5
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 7.2e-118 427.9 336 65.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.1e-117 426.4 337 63.8
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 3.6e-117 425.6 345 62.6
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 3.6e-117 425.6 350 62.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.0e-116 422.5 339 64.3
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 6.7e-116 421.4 341 64.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.7e-115 417.5 339 63.7
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 9.7e-115 417.5 339 63.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.2e-114 416.4 347 62.5
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 6.3e-114 414.8 347 62.0
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.8e-113 413.3 340 61.5
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 6.9e-113 411.4 327 62.4
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.2e-112 410.6 321 64.2
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.2e-110 402.5 338 58.3
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 3.2e-110 402.5 338 58.3
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 3.6e-109 399.1 347 59.7
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.4e-108 397.1 338 59.2
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.4e-108 397.1 321 61.1
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.3e-107 392.5 309 65.0
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 4.4e-107 392.1 338 61.2
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-106 390.6 328 60.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.2e-106 389.8 341 58.7
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 8.2e-106 387.9 335 60.3
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.0e-103 380.9 335 58.5
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.8e-103 379.0 271 68.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 6.5e-103 378.3 341 56.6
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-102 377.1 341 57.5
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 9.4e-102 374.4 337 57.6
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 8.0e-101 371.3 343 56.9
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.5e-99 367.1 341 55.1
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.0e-99 366.7 317 59.0
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.3e-99 365.9 326 59.5
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.7e-99 365.2 337 55.5
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.7e-98 363.6 328 59.1
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 3.7e-98 362.5 257 68.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.4e-97 360.5 318 56.6
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.7e-96 356.3 313 59.7
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 3.5e-96 355.9 338 52.1
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.0e-95 354.4 251 69.3
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.2e-94 349.0 268 64.9
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.2e-94 349.0 336 52.7
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 7.2e-94 348.2 336 53.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 9.4e-94 347.8 327 54.7
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.7e-93 346.3 336 53.0
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.8e-92 343.6 331 54.4
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.2e-92 342.0 307 57.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 6.8e-92 341.7 325 53.5
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-91 340.9 339 53.7
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.5e-91 340.5 326 54.9
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 2.6e-91 339.7 398 49.5
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 9.8e-91 337.8 336 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.8e-90 335.5 335 51.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.8e-90 335.5 335 50.7
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 8.3e-90 334.7 331 51.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.4e-89 334.0 339 53.1
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-88 330.9 324 52.2
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.2e-88 330.9 324 51.9
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.6e-88 330.5 341 51.6
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.7e-88 328.2 317 52.7
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 2.2e-87 326.6 325 51.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 2.2e-87 326.6 325 51.4
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.2e-87 326.6 223 74.9
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 3.8e-87 325.9 334 50.9
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 9.5e-86 321.2 340 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.0e-84 316.2 336 49.4
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 6.8e-84 315.1 274 59.1
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-83 313.2 276 55.4
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 2.4e-81 306.6 343 46.9
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 5.0e-79 298.9 271 56.8
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 6.6e-79 298.5 189 75.7
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 3.3e-78 296.2 314 46.5
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.4e-75 285.8 253 59.7
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 7.5e-75 285.0 189 72.5
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-73 281.2 191 69.6
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.4e-73 280.0 179 71.5
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.7e-71 273.9 189 70.4
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.3e-71 273.5 323 47.1
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.2e-68 262.3 189 65.6
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.2e-65 253.1 183 69.4
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 7.5e-59 231.9 190 58.9
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.1e-57 225.3 184 58.2
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.6e-56 224.2 236 49.6
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 3.5e-56 223.0 332 39.2
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 5.8e-51 205.7 158 66.5
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.8e-50 203.0 228 51.8
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-47 194.1 328 37.5
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 3.3e-38 163.3 176 54.0
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 4.5e-35 152.9 172 50.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 4.9e-34 149.4 172 47.1
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 6.4e-34 149.1 104 73.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 6.0e-32 142.5 92 75.0
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 4.8e-29 132.9 95 67.4
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-28 131.7 89 68.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 1.2e-27 128.3 334 30.5
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 7.6e-27 125.6 77 77.9
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 5.3e-20 102.8 85 57.6
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 4.5e-19 99.8 75 69.3
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.5e-17 94.0 81 53.1
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 2.5e-17 94.0 80 55.0
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 3.9e-15 86.7 57 71.9
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.9e-14 84.3 57 71.9
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 4.8e-13 79.7 54 68.5
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 6.3e-13 79.3 74 59.5
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 6.9e-12 75.9 66 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.5e-06 58.2 73 41.1


User provided reference genes

Program Settings