Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.1e-93 345.1 173 100.0
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.4e-52 208.8 115 90.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.3e-45 184.9 111 85.6
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.3e-29 131.7 90 72.2
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.2e-22 109.8 110 52.7
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.8e-22 109.4 112 53.6
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.8e-22 109.4 113 53.1
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 4.8e-22 108.6 123 53.7
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.6e-20 103.6 110 51.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.6e-20 102.8 110 47.3
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 4.5e-20 102.1 112 50.9
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.9e-20 101.7 110 52.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 7.7e-20 101.3 110 50.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 8.5e-19 97.8 95 51.6
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.1e-18 97.4 115 46.1
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.9e-18 96.7 106 52.8
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.5e-18 96.3 110 48.2
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.2e-18 95.9 93 54.8
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 4.2e-18 95.5 97 50.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 5.5e-18 95.1 113 48.7
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.5e-18 95.1 95 54.7
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.2e-18 94.7 102 49.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.2e-18 94.7 95 54.7
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.2e-18 94.7 95 54.7
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.4e-18 94.4 96 52.1
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.6e-17 93.6 111 47.7
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.6e-17 93.6 96 54.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.6e-17 93.6 96 53.1
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.1e-17 93.2 96 53.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.7e-17 92.0 98 48.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.4e-16 90.5 111 45.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.0e-16 89.4 97 47.4
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.0e-16 89.4 97 47.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.0e-16 89.0 109 46.8
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.0e-15 86.7 98 51.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 3.4e-15 85.9 92 52.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 4.4e-15 85.5 99 48.5
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 7.5e-15 84.7 93 55.9
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-14 83.6 93 51.6
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.7e-14 83.6 107 47.7
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 1.7e-14 83.6 85 57.6
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.8e-14 82.8 93 49.5
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.8e-14 82.8 113 45.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 3.7e-14 82.4 111 45.0
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.1e-13 80.9 99 46.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-13 80.9 104 46.2
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-13 80.5 97 48.5
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.4e-13 80.5 102 51.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.1e-13 79.3 113 39.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 4.1e-13 79.0 97 47.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 4.1e-13 79.0 96 46.9
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 5.4e-13 78.6 113 39.8
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.6e-12 77.0 96 45.8
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.6e-12 77.0 104 47.1
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.0e-12 76.6 91 49.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.5e-12 75.9 97 46.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.5e-12 75.5 99 43.4
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 5.9e-12 75.1 94 48.9
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.7e-12 74.7 93 43.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 7.7e-12 74.7 92 43.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.0e-11 74.3 93 46.2
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.7e-11 73.6 92 43.5
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 5.0e-11 72.0 102 43.1
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.1e-10 70.9 93 41.9
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.5e-10 70.5 118 39.8
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.9e-10 70.1 91 47.3
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.9e-10 70.1 114 41.2
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.9e-10 70.1 97 43.3
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.5e-10 69.7 102 44.1
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.5e-10 69.7 94 41.5
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 7.2e-10 68.2 107 43.0
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 2.7e-09 66.2 97 40.2
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.6e-09 65.9 88 43.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 4.7e-09 65.5 98 42.9
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 6.1e-09 65.1 111 39.6
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 8.0e-09 64.7 105 42.9
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-08 63.9 94 42.6
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-08 63.9 94 42.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.4e-08 63.9 107 43.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.8e-08 63.5 114 41.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.0e-08 62.8 104 39.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 3.0e-08 62.8 108 38.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.0e-08 62.4 96 42.7
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.2e-07 60.8 74 45.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.2e-07 60.8 103 38.8
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.2e-07 60.8 117 41.0
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.2e-07 60.8 105 41.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.2e-07 60.8 91 41.8
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.6e-07 59.7 106 36.8
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.6e-07 59.7 87 42.5
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.4e-07 59.3 82 43.9
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.4e-07 59.3 115 38.3
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 4.4e-07 58.9 73 47.9
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.4e-07 58.9 108 39.8
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 5.7e-07 58.5 110 34.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 7.5e-07 58.2 112 39.3
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.5e-07 58.2 89 41.6
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 7.5e-07 58.2 105 34.3
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 7.5e-07 58.2 90 41.1
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 9.8e-07 57.8 94 41.5
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 9.8e-07 57.8 76 48.7
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 9.8e-07 57.8 101 35.6
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.8e-07 57.8 109 39.4
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.7e-06 57.0 118 36.4
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-06 57.0 102 38.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.7e-06 57.0 108 38.9
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 2.2e-06 56.6 96 40.6
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.2e-06 56.6 89 40.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.3e-06 55.1 98 35.7


User provided reference genes

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