Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 1.0e-35 152.9 79 100.0
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 7.3e-34 146.7 78 96.2
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 4.9e-30 134.0 79 87.3
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.0e-27 126.3 79 84.8
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.6e-17 92.4 75 62.7
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 6.9e-16 87.0 80 58.8
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 1.5e-15 85.9 80 57.5
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 3.4e-15 84.7 80 57.5
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 5.8e-15 84.0 75 60.0
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 7.6e-15 83.6 77 57.1
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 2.2e-14 82.0 80 58.8
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 3.8e-14 81.3 81 59.3
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 3.8e-14 81.3 80 57.5
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.4e-14 80.5 77 51.9
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 8.4e-14 80.1 86 58.1
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.4e-13 79.3 77 50.6
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 1.9e-13 79.0 76 60.5
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 3.2e-13 78.2 75 56.0
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 4.2e-13 77.8 81 56.8
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.2e-12 76.3 79 51.9
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.2e-12 76.3 80 55.0
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.2e-12 76.3 75 56.0
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.6e-12 75.9 75 56.0
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.1e-12 75.5 75 53.3
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 3.5e-12 74.7 77 53.2
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.5e-12 74.7 79 55.7
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.5e-12 74.7 79 55.7
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 7.9e-12 73.6 81 54.3
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 7.9e-12 73.6 75 54.7
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.3e-11 72.0 75 52.0
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.0e-11 71.6 75 53.3
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.9e-11 71.2 81 55.6
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.1e-11 70.9 80 53.8
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 8.7e-11 70.1 78 51.3
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 3.3e-10 68.2 77 50.6
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 7.4e-10 67.0 77 50.6
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 7.4e-10 67.0 78 51.3
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 1.3e-09 66.2 77 48.1
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 1.3e-09 66.2 76 51.3
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 1.6e-09 65.9 77 44.2
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 3.7e-09 64.7 76 50.0
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 4.8e-09 64.3 67 53.7
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 6.2e-09 63.9 80 48.8
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.2e-09 63.9 77 45.5
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 6.2e-09 63.9 78 46.2
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 6.2e-09 63.9 81 50.6
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 8.1e-09 63.5 81 51.9
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.8e-08 62.4 77 49.4
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 1.8e-08 62.4 81 49.4
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 5.3e-08 60.8 75 46.7
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 6.9e-08 60.5 88 40.9
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 9.0e-08 60.1 74 45.9
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 1.2e-07 59.7 77 49.4
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.5e-07 59.3 77 46.8
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 1.5e-07 59.3 69 47.8
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 4.5e-07 57.8 77 45.5
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 4.5e-07 57.8 80 46.2
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 7.6e-07 57.0 77 44.2
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 1.7e-06 55.8 79 41.8
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 2.2e-06 55.5 65 52.3
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 2.9e-06 55.1 81 44.4
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 3.8e-06 54.7 81 46.9
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.8e-06 54.7 81 44.4
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 6.4e-06 53.9 84 46.4
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 8.4e-06 53.5 77 41.6


User provided reference genes

Program Settings