Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 3.2e-147 525.4 333 100.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.6e-125 452.6 323 84.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.8e-113 413.3 333 73.9
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.1e-78 295.8 341 58.4
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 1.8e-70 270.4 301 61.1
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.4e-62 244.2 293 54.3
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.9e-62 243.8 343 53.6
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.6e-61 239.2 351 49.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 7.8e-61 238.4 336 48.8
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 7.8e-61 238.4 336 53.0
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.3e-60 237.7 337 54.3
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-60 237.7 336 53.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.7e-60 237.3 348 52.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 5.0e-60 235.7 299 56.5
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.9e-59 233.8 342 50.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.9e-59 233.8 333 52.0
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.6e-58 230.7 328 54.0
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.1e-58 230.3 340 57.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.8e-57 227.3 326 50.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.1e-57 226.5 326 54.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 8.9e-57 224.9 364 55.2
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.9e-57 224.9 342 56.1
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 8.9e-57 224.9 341 47.5
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.9e-57 224.9 337 55.5
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-56 224.6 353 51.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 1.2e-56 224.6 345 49.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.0e-56 223.8 361 51.2
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.4e-56 222.6 337 47.8
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 5.8e-56 222.2 328 50.9
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 7.5e-56 221.9 327 52.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.3e-55 221.1 332 52.7
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.3e-55 221.1 327 53.8
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.3e-55 221.1 345 47.0
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 6.4e-55 218.8 335 50.7
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.4e-55 218.8 337 49.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.1e-54 218.0 326 51.8
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 4.1e-54 216.1 346 51.2
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 7.1e-54 215.3 327 53.2
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 7.1e-54 215.3 346 51.2
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.2e-54 214.9 325 56.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.2e-53 214.5 320 47.8
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.6e-53 214.2 332 50.6
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 4.6e-53 212.6 346 52.9
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 7.8e-53 211.8 343 56.0
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.0e-52 211.5 334 56.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.3e-52 211.1 330 46.4
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 5.1e-52 209.1 331 51.1
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.1e-51 208.0 336 48.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.5e-51 207.6 346 54.3
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 7.3e-51 205.3 343 53.9
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.2e-50 204.5 341 43.7
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.2e-50 204.5 341 54.3
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-50 203.8 345 53.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.8e-50 203.4 344 52.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.3e-49 200.3 329 55.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.1e-49 199.9 345 42.6
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 4.0e-49 199.5 339 51.3
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 8.9e-49 198.4 345 52.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 8.9e-49 198.4 345 43.2
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.0e-48 197.2 328 50.0
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.6e-48 196.8 323 45.2
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 2.2e-47 193.7 343 45.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 2.2e-47 193.7 344 53.2
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 8.3e-47 191.8 300 54.0
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-46 191.0 321 44.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.4e-46 191.0 320 41.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 3.2e-46 189.9 303 50.2
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.2e-46 189.9 351 49.3
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.1e-46 189.5 329 48.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-45 187.2 322 46.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 2.3e-44 183.7 231 50.2
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.0e-44 183.3 300 48.0
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.0e-44 183.3 331 45.3
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.9e-44 183.0 331 48.3
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-43 180.6 334 45.8
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.5e-43 180.3 351 45.9
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.3e-43 179.5 326 49.7
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 5.6e-43 179.1 330 40.0
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 7.3e-43 178.7 333 47.1
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 7.3e-43 178.7 285 51.6
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 9.6e-43 178.3 333 47.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.6e-42 177.6 343 41.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.6e-42 177.6 342 44.7
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.7e-42 176.0 329 44.1
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 6.2e-42 175.6 311 46.9
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 8.1e-42 175.3 314 46.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.8e-41 174.1 329 45.9
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.4e-41 173.7 335 47.2
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-41 173.7 335 47.2
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.4e-41 173.7 335 47.2
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 3.1e-41 173.3 341 44.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.0e-41 172.9 323 54.2
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.5e-40 171.0 331 45.6
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.5e-40 171.0 333 47.4
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.6e-40 170.2 366 43.7
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.4e-40 169.5 318 39.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 5.8e-40 169.1 334 44.9
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.8e-40 169.1 351 43.0
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 7.6e-40 168.7 339 44.2
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 9.9e-40 168.3 333 44.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 9.9e-40 168.3 347 45.8
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.7e-39 167.5 374 42.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.8e-39 166.4 402 40.5
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 8.4e-39 165.2 346 41.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-38 164.9 315 43.5
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.4e-38 164.5 315 43.5
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-38 164.1 328 43.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.4e-38 163.7 307 44.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 4.2e-38 162.9 317 43.5
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 4.6e-37 159.5 342 39.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 6.0e-37 159.1 351 49.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.3e-36 157.1 412 41.0
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 5.1e-36 156.0 270 44.1
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-35 154.1 338 49.4
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-35 154.1 339 49.9
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 4.3e-35 152.9 288 48.6
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.3e-34 151.4 353 41.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.6e-34 149.8 153 54.9
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 6.2e-34 149.1 349 39.8
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 3.1e-33 146.7 337 40.1
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.0e-32 144.1 351 43.6
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.2e-31 140.6 351 43.9
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.9e-31 139.4 300 40.0
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 6.4e-31 139.0 292 40.4
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-30 138.3 245 46.9
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.9e-30 137.5 293 38.9
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 7.9e-29 132.1 171 48.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.9e-29 132.1 335 37.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.0e-28 131.7 266 43.6
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.3e-28 131.3 201 44.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.3e-28 130.6 273 42.1
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 5.1e-28 129.4 150 50.7
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.6e-28 129.0 201 54.2
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 8.7e-28 128.6 323 40.6
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.3e-27 125.6 326 37.1
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.8e-26 123.6 336 37.5
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.2e-26 122.5 326 45.4
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-25 120.9 293 40.6
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.4e-25 120.6 209 47.8
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 9.0e-25 118.6 237 38.8
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.4e-24 116.7 192 56.2
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 3.8e-23 113.2 337 36.2
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.4e-22 111.3 160 45.0
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-22 111.3 115 53.0
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.9e-22 110.9 173 43.4
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.8e-20 104.4 381 38.8
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 7.4e-19 99.0 171 43.9
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.4e-15 85.5 306 36.6
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.2e-14 83.6 270 32.2
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 4.2e-14 83.2 367 32.4
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.6e-13 81.3 165 36.4
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 7.9e-13 79.0 181 36.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 9.6e-11 72.0 376 28.2
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.4e-07 58.9 90 51.1
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 8.4e-07 58.9 209 32.1
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.2e-06 56.6 103 38.8


User provided reference genes

Program Settings