Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.5e-82 309.7 177 100.0
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 1.5e-74 283.1 177 85.9
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 3.0e-67 258.8 177 85.9
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 4.7e-65 251.5 181 74.0
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.9e-42 176.4 122 72.1
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 4.3e-42 175.3 122 71.3
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 8.1e-41 171.0 115 74.8
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 1.1e-40 170.6 110 76.4
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 3.1e-40 169.1 125 67.2
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 4.0e-40 168.7 116 71.6
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 5.3e-40 168.3 123 69.1
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 6.9e-40 167.9 120 69.2
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 9.0e-40 167.5 108 76.9
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 1.2e-39 167.2 163 58.3
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.5e-39 166.8 116 72.4
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 2.6e-39 166.0 152 59.9
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 4.4e-39 165.2 151 58.9
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 4.4e-39 165.2 151 58.9
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 1.7e-38 163.3 141 61.7
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.2e-38 162.9 115 69.6
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 2.9e-38 162.5 113 69.9
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 4.9e-38 161.8 108 73.1
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 4.9e-38 161.8 116 70.7
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 6.4e-38 161.4 131 65.6
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 6.4e-38 161.4 123 64.2
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 6.4e-38 161.4 183 50.8
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 6.4e-38 161.4 108 72.2
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 8.4e-38 161.0 109 75.2
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 1.1e-37 160.6 176 51.7
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 3.2e-37 159.1 109 73.4
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 5.4e-37 158.3 108 70.4
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 5.4e-37 158.3 111 71.2
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 5.4e-37 158.3 131 61.1
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 7.1e-37 157.9 118 66.9
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 9.3e-37 157.5 109 73.4
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 9.3e-37 157.5 182 49.5
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 9.3e-37 157.5 148 58.8
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 1.6e-36 156.8 170 52.9
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 2.7e-36 156.0 118 63.6
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 4.6e-36 155.2 108 68.5
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 4.6e-36 155.2 114 67.5
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 7.9e-36 154.5 129 58.1
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 1.0e-35 154.1 132 60.6
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 1.7e-35 153.3 119 64.7
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.7e-35 153.3 115 68.7
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 1.7e-35 153.3 132 60.6
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 2.3e-35 152.9 128 62.5
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 6.6e-35 151.4 100 76.0
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-35 151.0 112 69.6
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-35 151.0 112 69.6
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 8.7e-35 151.0 136 60.3
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.1e-34 150.6 109 70.6
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.1e-34 150.6 144 55.6
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.1e-34 150.6 144 55.6
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 1.5e-34 150.2 144 55.6
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 1.9e-34 149.8 113 66.4
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 2.5e-34 149.4 105 75.2
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 2.5e-34 149.4 132 59.8
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 7.3e-34 147.9 140 56.4
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 1.6e-33 146.7 108 67.6
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 2.8e-33 146.0 114 62.3
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 2.8e-33 146.0 108 67.6
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 6.2e-33 144.8 111 61.3
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 6.2e-33 144.8 147 54.4
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 8.1e-33 144.4 125 58.4
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 1.1e-32 144.1 108 67.6
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 1.4e-32 143.7 108 64.8
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 1.8e-32 143.3 108 63.9
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 1.8e-32 143.3 108 64.8
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 3.1e-32 142.5 121 59.5
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 3.1e-32 142.5 108 64.8
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 3.1e-32 142.5 108 64.8
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 4.0e-32 142.1 109 65.1
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 5.3e-32 141.7 97 71.1
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 6.9e-32 141.4 108 66.7
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 6.9e-32 141.4 108 66.7
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 1.2e-31 140.6 108 65.7
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 1.2e-31 140.6 94 73.4
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 2.0e-31 139.8 105 66.7
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 4.5e-31 138.7 109 61.5
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 9.9e-31 137.5 95 70.5
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 9.9e-31 137.5 108 60.2
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 2.9e-30 136.0 105 67.6
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 6.4e-30 134.8 105 64.8
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 4.2e-29 132.1 97 68.0
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 9.3e-29 131.0 108 58.3
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 3.5e-28 129.0 95 65.3
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 6.0e-28 128.3 96 65.6
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 3.9e-27 125.6 124 58.9
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 3.3e-26 122.5 97 60.8
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 5.6e-26 121.7 102 60.8
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 1.6e-25 120.2 102 58.8
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 2.0e-23 113.2 108 50.9
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.7e-22 110.2 103 65.0
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 3.2e-21 105.9 82 56.1
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 5.5e-21 105.1 72 69.4
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 7.1e-21 104.8 83 63.9
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 1.2e-20 104.0 107 51.4
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 2.1e-20 103.2 76 64.5
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 2.7e-20 102.8 88 59.1
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 3.5e-20 102.4 114 47.4
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 8.7e-19 97.8 88 56.8
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-17 91.3 90 50.0
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.8e-16 90.1 63 74.6
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 5.3e-16 88.6 61 67.2
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 2.9e-14 82.8 98 48.0
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 5.3e-08 62.0 115 40.0


User provided reference genes

Program Settings