Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G047070 Cucumis sativus L. HOM05D008224 ORTHO05D010083 7.4e-83 310.5 154 100.0
ClCG01G020280 Citrullus lanatus HOM05D008224 ORTHO05D010083 1.3e-55 219.9 134 85.1
MELO3C007900.2 Cucumis melo HOM05D008224 ORTHO05D010083 1.0e-52 210.3 117 91.5
Sed0025479 Sechium edule HOM05D008224 ORTHO05D010083 5.8e-27 124.8 86 75.6
Sed0001082 Sechium edule HOM05D008224 ORTHO05D010083 2.7e-16 89.4 131 47.3
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 1.7e-15 86.7 132 43.2
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 2.3e-15 86.3 136 45.6
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 3.0e-15 85.9 133 45.1
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 1.1e-14 84.0 116 46.6
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 1.1e-14 84.0 90 54.4
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 3.3e-14 82.4 110 52.7
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 5.6e-14 81.6 90 53.3
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 1.3e-13 80.5 123 44.7
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 2.1e-13 79.7 105 44.8
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 2.8e-13 79.3 90 52.2
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 2.8e-13 79.3 105 50.5
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 3.6e-13 79.0 107 45.8
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 6.2e-13 78.2 116 44.8
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 6.2e-13 78.2 122 41.8
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 6.2e-13 78.2 115 44.3
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 8.1e-13 77.8 130 40.0
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 8.1e-13 77.8 105 49.5
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 8.1e-13 77.8 113 43.4
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 1.1e-12 77.4 106 51.9
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.1e-12 77.4 138 39.9
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 1.8e-12 76.6 97 51.5
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 3.1e-12 75.9 138 41.3
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 3.1e-12 75.9 113 42.5
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 4.0e-12 75.5 138 38.4
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 5.3e-12 75.1 100 43.0
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 1.5e-11 73.6 84 50.0
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 3.4e-11 72.4 133 45.1
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 4.5e-11 72.0 90 51.1
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 5.8e-11 71.6 96 47.9
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 9.9e-11 70.9 115 41.7
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 2.2e-10 69.7 106 44.3
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 2.9e-10 69.3 92 44.6
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 3.8e-10 68.9 80 47.5
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 8.4e-10 67.8 114 39.5
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.4e-09 67.0 129 41.1
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.4e-09 67.0 129 41.1
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 4.2e-09 65.5 114 39.5
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 5.5e-09 65.1 130 39.2
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 5.5e-09 65.1 130 39.2
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 5.5e-09 65.1 129 41.1
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 9.3e-09 64.3 74 54.1
Gorai.003G009900 Gossypium raimondii HOM05D008224 ORTHO05D010083 9.3e-09 64.3 115 40.0
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 2.1e-08 63.2 126 40.5
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 7.9e-08 61.2 83 43.4
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 1.8e-07 60.1 85 47.1
Oeu064592.1 Olea europaea HOM05D008224 ORTHO05D010083 3.0e-07 59.3 103 42.7
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 3.9e-07 58.9 98 42.9
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 3.9e-07 58.9 105 41.0
Hma1.2p1_0956F.1_g241380 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 5.1e-07 58.5 86 44.2
Hma1.2p1_2239F.1_g317816 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 5.1e-07 58.5 86 44.2
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 5.1e-07 58.5 64 51.6
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 6.7e-07 58.2 120 40.8
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 6.7e-07 58.2 79 44.3
BcaB02g10776 Brassica carinata HOM05D014245 ORTHO05D010083 2.5e-06 56.2 75 42.7
ATR0627G002 Amborella trichopoda HOM05D008224 ORTHO05D010083 4.3e-06 55.5 104 35.6
EL10Ac6g15476 Beta vulgaris HOM05D008224 ORTHO05D010083 4.3e-06 55.5 111 37.8
ATR0481G006 Amborella trichopoda HOM05D008224 ORTHO05D010083 7.4e-06 54.7 104 34.6
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 7.4e-06 54.7 69 43.5
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 7.4e-06 54.7 83 43.4
A06p26690 Brassica napus HOM05D014245 ORTHO05D010083 9.6e-06 54.3 75 42.7


User provided reference genes

Program Settings