Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 3.1e-242 841.3 399 100.0
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 4.5e-241 837.4 399 99.2
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 5.2e-237 823.9 397 98.7
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.2e-233 812.8 397 96.7
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 3.6e-222 774.6 400 92.0
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 8.0e-222 773.5 400 90.8
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.8e-221 772.3 402 91.0
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 5.8e-220 767.3 403 89.8
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 2.2e-219 765.4 397 90.9
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 6.4e-219 763.8 397 89.9
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 6.4e-219 763.8 400 89.5
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 8.3e-219 763.5 401 89.5
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.1e-218 763.1 400 89.2
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.1e-218 763.1 400 89.2
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.9e-218 762.3 403 89.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 2.4e-218 761.9 400 89.8
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 4.1e-218 761.1 405 88.4
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 9.2e-218 760.0 397 88.7
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.3e-216 756.1 404 89.6
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 1.1e-215 753.1 405 87.4
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 1.1e-215 753.1 403 87.3
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.5e-215 752.7 402 88.3
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.9e-215 752.3 405 86.7
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 2.5e-215 751.9 405 86.4
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.3e-215 751.5 402 87.6
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.3e-215 751.1 404 89.1
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 5.6e-215 750.7 405 86.9
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 5.6e-215 750.7 403 87.3
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 7.3e-215 750.4 403 87.3
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 9.5e-215 750.0 401 88.0
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 4.7e-214 747.7 402 87.3
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 4.7e-214 747.7 403 87.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 6.2e-214 747.3 402 86.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.1e-213 746.5 406 86.2
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.8e-213 745.7 402 87.8
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.3e-213 745.3 417 84.4
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 3.1e-213 745.0 405 86.2
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 3.1e-213 745.0 402 87.3
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.0e-213 744.6 397 88.7
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 8.9e-213 743.4 410 86.1
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 2.6e-212 741.9 405 86.2
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.4e-212 741.1 397 87.9
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 7.5e-212 740.3 387 89.7
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 7.5e-212 740.3 398 87.4
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 2.2e-211 738.8 415 86.3
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 2.2e-211 738.8 403 86.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 2.2e-211 738.8 403 86.6
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.2e-211 738.8 403 88.1
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 2.2e-211 738.8 390 90.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 4.9e-211 737.6 401 86.5
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 4.9e-211 737.6 402 85.3
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 6.4e-211 737.3 408 85.5
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.6e-209 732.6 433 81.1
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.7e-208 729.2 403 84.6
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 2.3e-208 728.8 434 80.6
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 3.0e-208 728.4 391 88.0
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 3.9e-208 728.0 400 83.0
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 5.1e-208 727.6 401 84.0
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 6.6e-208 727.2 394 87.1
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 1.5e-207 726.1 400 84.0
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.5e-207 725.3 396 85.4
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 3.3e-207 724.9 400 83.0
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 7.3e-207 723.8 401 85.0
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 1.2e-206 723.0 390 86.9
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 1.2e-206 723.0 400 82.8
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.2e-206 723.0 409 84.1
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.6e-206 722.6 388 87.1
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 4.7e-206 721.1 402 84.1
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 6.2e-206 720.7 402 82.6
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.1e-205 719.9 403 84.4
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 1.1e-205 719.9 395 86.3
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.8e-205 719.2 401 86.0
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 1.5e-204 716.1 403 84.1
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.5e-204 716.1 401 85.8
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.8e-204 714.1 403 84.9
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 9.9e-204 713.4 398 83.4
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 1.7e-203 712.6 413 82.8
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.9e-203 711.8 401 85.5
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 6.4e-203 710.7 400 82.2
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.7e-200 702.6 391 83.9
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.9e-200 701.4 397 84.1
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 8.7e-200 700.3 382 84.0
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 8.7e-200 700.3 382 84.0
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 3.3e-199 698.4 415 81.2
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 7.3e-199 697.2 399 82.5
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 2.1e-198 695.7 400 79.8
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 6.2e-198 694.1 421 81.0
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.4e-197 693.0 384 83.6
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 2.4e-197 692.2 404 81.2
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.2e-195 685.6 387 84.5
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.9e-194 682.6 364 88.2
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 7.8e-193 677.2 405 79.0
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.5e-191 672.2 380 84.5
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 3.1e-189 665.2 383 79.9
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 6.9e-189 664.1 383 79.6
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 9.0e-189 663.7 406 80.0
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 3.4e-188 661.8 383 79.6
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 2.9e-187 658.7 402 77.4
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 3.8e-187 658.3 384 81.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.2e-186 655.2 403 78.9
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 9.3e-186 653.7 400 79.5
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 2.1e-185 652.5 372 80.1
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.8e-184 649.4 357 85.4
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 2.5e-183 645.6 400 78.8
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.0e-179 633.6 399 76.4
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 5.1e-176 621.3 341 85.3
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 8.7e-176 620.5 353 80.7
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 2.6e-172 609.0 326 85.0
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 3.8e-171 605.1 393 74.0
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 9.3e-170 600.5 393 70.7
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 3.7e-166 588.6 398 70.6
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 5.3e-165 584.7 392 69.1
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.0e-163 580.5 395 68.4
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 4.6e-161 571.6 305 89.2
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.3e-158 563.5 306 87.9
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.7e-153 545.0 306 86.3
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 4.4e-151 538.5 400 64.8
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 7.4e-151 537.7 345 74.5
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 5.5e-146 521.5 393 63.4
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 5.2e-120 435.3 242 84.7
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 4.7e-105 385.6 266 66.5
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 7.1e-101 371.7 208 85.1
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.3e-91 340.1 186 84.9
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.4e-88 330.1 218 76.6
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.3e-86 324.3 171 86.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 3.8e-86 322.8 370 51.9
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.6e-84 317.4 162 87.7
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.4e-77 293.5 436 40.1
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 3.2e-77 293.1 224 62.5
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.0e-71 273.9 146 84.9
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 8.4e-62 241.9 141 80.1
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 3.9e-59 233.0 172 62.8
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.2e-44 184.9 190 53.2
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.6e-31 140.6 72 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 7.7e-23 112.5 197 39.1
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 4.1e-16 90.1 274 27.7
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 1.6e-07 61.6 51 58.8


User provided reference genes

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